Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2055 ATGGATTTTGCAGATGGAGAAGATAACTCACTTGGTTTCGGGCTGAAGGTGATGATCGCCGCAGCTTTCACGATATTCGCCGTCGTCTTCTTCATAATCGCCTACCACTTCTACGTCCGACGCCGCCGACGAATTTTTCTGCTGAGCCTGAACAGACGCCTCGCCGTTCAACCAGTTCATCAAATCAGTACTCAAGTTTTGCCGATTGATGTCGAATTACGTTCTCCGAACGACGACCGTCAGGGGCTTGACTCTTCCGTCATAGAGTCGATTCCTAAACTCTGGTACAAGCAAACGGACCAGTTCAACGTCAGCGAAGCCGTAGAGTGCTCGGTTTGCTTAGCTATTATTGTCGAAGATGCAGCCGTTAGGGTTTTGCCTAACTGCAAGCACTTGTTTCATGTTGATTGTGTTGATACTTGGTTCACTTCCAACACCACTTGTCCGATTTGCCGTACTGTTGTTGAACCAATCGTGCGGTCCGGCGGTGGCGCTGTTCAACCCACGGCACCACCGGCATTAGAGAGCGGGGCTGTTGATGGGAAGAGGTGGAGACGGTATAGAGAATTTGTGGATGTGCAGTATGTGTTGGAGGGAATTAAATTCCAAGGTCCTGTTATTCCTATTAGGATTGCTAAAAAGAACTATTGTGTTGAAAGCCCCGATGAGAAGGTTGACAATTCTAAAGCATTAGTGATTGGTTTGAATGCATCTCTGATCGTTAAGATTATTGTAGAATCGATGATGAAGGTTAGAGAGGCTACTTTTCAGCTTGATGGGATGAAGGTGCCCGGTCCAGACGGCTTTAATGGCAAATTTTATCAAGCTTCCTGGTCTGAAGTTGGAGGGAAGGTGGTGCATATGGTTTGA 870 0.4713 MDFADGEDNSLGFGLKVMIAAAFTIFAVVFFIIAYHFYVRRRRRIFLLSLNRRLAVQPVHQISTQVLPIDVELRSPNDDRQGLDSSVIESIPKLWYKQTDQFNVSEAVECSVCLAIIVEDAAVRVLPNCKHLFHVDCVDTWFTSNTTCPICRTVVEPIVRSGGGAVQPTAPPALESGAVDGKRWRRYREFVDVQYVLEGIKFQGPVIPIRIAKKNYCVESPDEKVDNSKALVIGLNASLIVKIIVESMMKVREATFQLDGMKVPGPDGFNGKFYQASWSEVGGKVVHMV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2055 289 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Acco06g2055 289 SMART ring_2 110 151 IPR001841 -
Acco06g2055 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 158 IPR013083 -
Acco06g2055 289 SUPERFAMILY RING/U-box 93 158 - -
Acco06g2055 289 PANTHER RING-H2 FINGER PROTEIN ATL16 14 157 IPR044600 GO:0016567|GO:0016740
Acco06g2055 289 Pfam Ring finger domain 109 152 IPR001841 -
Acco06g2055 289 CDD RING-H2_EL5-like 109 152 - -
Acco06g2055 289 FunFam E3 ubiquitin-protein ligase ATL6 72 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2055 Acco-ChrAcco06 15479783 15484631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2055 16 160 C3H Transcription Factor Family AT2G42360 40.667 4.39e-28 106