Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2028 ATGGATTTCTCAAAGAAGCGCAAAACCGAGGAGAACGGGACCGACGATGCTGTGCCCTCAACAACCCCCCTTGGCGCGGATGACATCCGCAAGATCCTCCGACCCTTCACGCAAGAACAGCTTATCGACCTGCTTCAATCCGCTGCTCTCAGTCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCTGACCGTGACTCCACCCTTCGGAAGCTCTTTGTTCGGGGGCTTGCCGGGGAAACCACTACAGAGACACTCAGCAGTGTTTTCTCCTCCTATGGAGTGCTCGACGAGGCAATCGTTATTTTCGACAAAAATACCGGGAAGTCCAAAGGATACGGCTTTGTGACGTTTAAGCACGTTGATGGTGCTATATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACCCAGCTTGCAGCTGCTGGATTATCCGCCACTCAAGGGACAAATGCGGTTGCCGCAGCCACAAGTGATGTTTCTACCCGAAAAATTTTTGTAGGTAATGTTCCGTTTGATATATCGTCGGAGAGACTGTTGAATTACTTTTCAGCATATGGGGAAATCGAAGAAGGGCCTCTTGGGTTCGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCTAGAGCGTCTCTAGTTGAGCCAGTCAAAACTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAGAAGGGAAAATCTGGAGCTACTAATCAGGGCCCTCCTGGGTTGCCAGGTAATGGCATGGCAGCACAACAAACGCAACAATCTTTACCTGGCCCTATGATAGGATCTAATTATGGCGGTCATGGCTCTTCATATGGGGGATTTGGTGGTTCCATCTAG 897 0.4928 MDFSKKRKTEENGTDDAVPSTTPLGADDIRKILRPFTQEQLIDLLQSAALSHPDVLESIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSYGVLDEAIVIFDKNTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAAAGLSATQGTNAVAAATSDVSTRKIFVGNVPFDISSERLLNYFSAYGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVEPVKTIDGHQVLCKLAMDNKKGKSGATNQGPPGLPGNGMAAQQTQQSLPGPMIGSNYGGHGSSYGGFGGSI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2028 298 Gene3D - 150 295 IPR012677 -
Acco06g2028 298 Gene3D - 61 149 IPR012677 -
Acco06g2028 298 SMART rrm1_1 71 143 IPR000504 GO:0003723
Acco06g2028 298 SMART rrm1_1 169 241 IPR000504 GO:0003723
Acco06g2028 298 SUPERFAMILY RNA-binding domain, RBD 60 144 IPR035979 GO:0003676
Acco06g2028 298 MobiDBLite consensus disorder prediction 1 23 - -
Acco06g2028 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Acco06g2028 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Acco06g2028 298 SUPERFAMILY RNA-binding domain, RBD 160 260 IPR035979 GO:0003676
Acco06g2028 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Acco06g2028 298 PANTHER GEO13361P1-RELATED 51 279 - -
Acco06g2028 298 MobiDBLite consensus disorder prediction 248 275 - -
Acco06g2028 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2028 Acco-ChrAcco06 15257239 15258212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2028 150 281 C2H2 Transcription Factor Family AT2G19380 35.507 4.88e-16 76.6