Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2025 ATGGTTTACTGCTCTTATAATTCGATTTCTTCATCTGGGTCTGATCACTCGAGGCTGTTCGATCCAACTTCGAACAAGATTGTTGATTCTAACGGGGTTTTGCGGAGTGGGTTGGTGTCACCCAATTCGTTGGTCTTGAATAGTGAGAAGGAGGATCTGGTTAATTCCCCTATGAAAATTGGAAAGAAAGAGGCGTCTGAGGCGAAAGCTTTGGCGGCTATGAAGAACCACAGTGAAGCAGAGAGAAGGAGAAGGGAGAGAATTAATGGTCATCTTGATACACTTCGTGGTCTTGTGCCCTGCAATGCGAAGATGGATAAGGCAGCGTTATTGGCTGAAGTAATCAACCAAGTTAAGTTACTGAAGAAGAATGCAACGGAAGCCAGCAGGGGTTTCCTCATCCCAATGGATGATGATGAAGTTAAGGTTGAACCATACAAGTATGAAGGAAGAGAAGGATCAATGTTTTACATGGCATCTATATGTTGCGAATACCGGCCGGAGCTACTATCTGACCTAAGACAGGCTCTTGATGGCCTTCAACTACAACTAATGAGGGCAGAGATGTCAACTTTGGGAGGAAGGGTGAAGAATGTATTTTTCTTTAGGTGCTGCAAAACAGAACATATTAATATTGAAGCATGCCAACTTGTTCCAAGTACTGTCCACCAGGTACTAAGTTCTGTACTAGAGAAGGCTTCTAGCTCACTGGAATACTCTCTGGGAATGTCACTTCGAAGCAAGCGTAGAAGACTTTGCTTCATTGAAACATCAACTTCCTCGTGA 786 0.4364 MVYCSYNSISSSGSDHSRLFDPTSNKIVDSNGVLRSGLVSPNSLVLNSEKEDLVNSPMKIGKKEASEAKALAAMKNHSEAERRRRERINGHLDTLRGLVPCNAKMDKAALLAEVINQVKLLKKNATEASRGFLIPMDDDEVKVEPYKYEGREGSMFYMASICCEYRPELLSDLRQALDGLQLQLMRAEMSTLGGRVKNVFFFRCCKTEHINIEACQLVPSTVHQVLSSVLEKASSSLEYSLGMSLRSKRRRLCFIETSTSS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2025 261 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Acco06g2025 261 PANTHER TRANSCRIPTION FACTOR BHLH30 38 256 IPR045847 GO:0003700|GO:0006355
Acco06g2025 261 Coils Coil 170 190 - -
Acco06g2025 261 CDD ACT_UUR-ACR-like 160 201 - -
Acco06g2025 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Acco06g2025 261 SMART finulus 78 127 IPR011598 GO:0046983
Acco06g2025 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 127 IPR036638 GO:0046983
Acco06g2025 261 Gene3D - 67 130 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2025 Acco-ChrAcco06 15244176 15246720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2025 60 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 42.222 9.93e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g2025 HLH 6.5e-10 No_clan