Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2000 ATGGAGAAGCAGGGCCAAATTTTGATGCAGAAATATGAGCGTGGCCGCTTGCTAGGCCAGGGCTCATTCTCTAAGGTTTATCTTGCCAGAAACTTGAAAACTGGGCAACTTGTTGCAATGAAGATCATTGATAAAGAGAAGATTGAAAAAGTTGGCTTGAACGACCAAATCGAGAGAGAAGTCTCTGTGATGAGCATGATTAAGCACCCAAACATTGTGCAGCTTTACGAAGTGATGGCTACCAAGACCAAGATTTACTTCGCCATGGAGTATGTGAAAGGTGGAGATCTCTTGGCCAAACTTCTCAAAGGGAAGCTCAAGGAAGACATAGCCAGAAATTACTTTCAGCAGCTCATTGAAGCTGTGGATTTCTGCCACAGCAGAGGGGTATACCATCGTGACCTGAAACTAGAGAATCTTCTTCTAGACGAAAATGGGGTTCTTAAAGTTTCAGACTTTGGACTAAGCGCGTTGTGGGAATCCAGAAAATCTGATGGGCTTCTACACACGTTGTGTGGAACTCCATCTTATGTAGCCCCTGAAGTGATCAACAAGAAAGGCTATGACGGAGCCAAAACTGATACATGGTCATGTGGGGTGATTCTTTTTGTTCTTCTTGCTGGATTTCTTCCTTTTCAAGACAAGAATTTAATCTCAATGTACGTGAAAATTAGAAATGCAGAGTTTACGTATCCAAAGTGGTTCCCACCTGGGGCAAGAAAGCTTCTCTCCAGAATCCTTGATGCAAACCCTAGAAGAAGAGTAACTATCTCCAAGATAAAGGAAACACCATGGTTCAGAGAGGGATATAAGCAGATTGAAGCATCTTTGTTGCTACAATCAACTTCAGATGATGACTTGGTGCCGAAAAACGAAGCAGAAAGATCCATGAAACCTGTTAGTTTCAATGCATTTGACCTCATATCTCTGTCTCCAGGATTTGACCTTTCTCCTTTGTTTGAGAGAGACAGGACTTCAAGACACGAGGCTAGATTCACCACCACAAAAGAAGCCTCCACGATTGTTTCAAAACTGGAGGAGATAGCTCAGGCGGATAGCAAATTCAAGGTTTTGAAGAAGAATGGTACAGTGAAATTGCAGGGTAGCAAGGTAGGGAGAAAGGGGCAACTTGGTATAGATGCAGAGATTTTTGAAGTAACGTCGTCGTTTCACATTGTGGAGGTGAAGAAGACATCAGGAGACACATTGGAATATATTCAATTCAGAGACCAAGACTTAAAACCTTCTCTAAAAGATATATTGTGGGAATGGCAAGGAAGTGAGAATGATGGATAG 1296 0.4236 MEKQGQILMQKYERGRLLGQGSFSKVYLARNLKTGQLVAMKIIDKEKIEKVGLNDQIEREVSVMSMIKHPNIVQLYEVMATKTKIYFAMEYVKGGDLLAKLLKGKLKEDIARNYFQQLIEAVDFCHSRGVYHRDLKLENLLLDENGVLKVSDFGLSALWESRKSDGLLHTLCGTPSYVAPEVINKKGYDGAKTDTWSCGVILFVLLAGFLPFQDKNLISMYVKIRNAEFTYPKWFPPGARKLLSRILDANPRRRVTISKIKETPWFREGYKQIEASLLLQSTSDDDLVPKNEAERSMKPVSFNAFDLISLSPGFDLSPLFERDRTSRHEARFTTTKEASTIVSKLEEIAQADSKFKVLKKNGTVKLQGSKVGRKGQLGIDAEIFEVTSSFHIVEVKKTSGDTLEYIQFRDQDLKPSLKDILWEWQGSENDG 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2000 431 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2000 431 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Acco06g2000 431 CDD CIPK_C 303 418 - -
Acco06g2000 431 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2000 431 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Acco06g2000 431 Pfam NAF domain 299 357 IPR004041 GO:0007165
Acco06g2000 431 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g2000 431 Gene3D Kinase associated domain 1, KA1 304 423 - -
Acco06g2000 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Acco06g2000 431 FunFam Non-specific serine/threonine protein kinase 297 422 - -
Acco06g2000 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 415 - -
Acco06g2000 431 Gene3D Transferase(Phosphotransferase) domain 1 2 303 - -
Acco06g2000 431 FunFam Non-specific serine/threonine protein kinase 6 302 - -
Acco06g2000 431 SUPERFAMILY Protein kinase-like (PK-like) 8 283 IPR011009 -
Acco06g2000 431 FunFam Non-specific serine/threonine protein kinase 3 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2000 Acco-ChrAcco06 15020060 15021355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2000 1 426 CBL-interacting serine-threonine protein kinases AT5G45820 64.637 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Acco06g2000 Pkinase 3.8e-74 CL0016