Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1998 ATGAATCGATCAGTCCCACCTTTGACACCCATCGACAGATTCTTATGGAGCCAGCATGCACAGAATCACAAGGCTTCTACTGTTTGGCCTAACAGTGGATCAGGATCAAGTTTCATTGATGGGTTTGTGTTACCAAATGAGCAAGCTTTGAACTGGACACACACTCAAGTCCCACCATTGTGCTTCAGAAACAGAATTCTGGGGAAGCATCATGATGGTGGTGGTGGTGATACTGTGGGAAGGAGAATTAATAAGAAAGGGTCTCGCGTGTCTTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGGTGAGATTGGTGAATCAATATGGTGTGAAGAAATGGGCTCAAATAGCTGAGAAATTGGATGGAAGAGCGGGCAAGCAGTGTAGAGAGAGATGGCATAATCATTTGCGCCCTGATATTAAGAAAGATAGTTGGAATGAAGAAGAAGAGAGGATACTGGTGGAAACCCATGCCAAGGTTGGGAATCGTTGGGCAGAAATAGCAAAGAGCATTCCAGGAAGAACAGAGAACGCAATCAAGAACCATTGGAATGCCACTAAAAGAAGACAGAATTCAAAGAGAAAGAAGAAAATCACACACACAAATCACAAAAGGATACGTCCCTCTATACTTGAAGACTACATCAGAAGAAAGACCCTTCTAATAAATAACACAGCCCAGAAGAACAACATCGCAGAAAATCAGTCTGAACCCTCTTCTGAATCTGCTCTTGTTAACGCCAACTCTGTAATAGCTGAACCATATGATGAGGAATTTCTCTTCTTGCAAGGATTTTTCGCCGACAATCTGAACCAGAAACAGTATCCTTCTGCTGCTGATGCTGAACACTCTGAGAATTCTTCAACTTGCTTCTCGTTGGACTTTTGTCAAACAGATGGTGAAAATCATGTTATCACTGACGTGACAACTACAGGGTCTGGATTTGTGTATTCCATGTCAAACCCAGATAACAAAACAAGCTTCTATGAGAATCTCCTCACTGAGGAGGCTGTCACTCCCATTAAACACTCCCAATCTGATCTTTATCTCTCTCACTTGCTCAATGGACCACCTTCCAATTCATCACTTCTATATGGGTATGGAAATCATCCAAACCTGAACATGAATTTGCTTATGGGGCATCAAGACAATAGTTCAGAACGAAAGCCAGAGATGGATTTGATGGAATTGGTTTCTTCAAAGTTTTCTCCAAGCACCAACAGTAGCGTTTGA 1245 0.4217 MNRSVPPLTPIDRFLWSQHAQNHKASTVWPNSGSGSSFIDGFVLPNEQALNWTHTQVPPLCFRNRILGKHHDGGGGDTVGRRINKKGSRVSLIKGQWTDEEDRKLVRLVNQYGVKKWAQIAEKLDGRAGKQCRERWHNHLRPDIKKDSWNEEEERILVETHAKVGNRWAEIAKSIPGRTENAIKNHWNATKRRQNSKRKKKITHTNHKRIRPSILEDYIRRKTLLINNTAQKNNIAENQSEPSSESALVNANSVIAEPYDEEFLFLQGFFADNLNQKQYPSAADAEHSENSSTCFSLDFCQTDGENHVITDVTTTGSGFVYSMSNPDNKTSFYENLLTEEAVTPIKHSQSDLYLSHLLNGPPSNSSLLYGYGNHPNLNMNLLMGHQDNSSERKPEMDLMELVSSKFSPSTNSSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1998 414 ProSiteProfiles Myb-like domain profile. 89 140 IPR001005 -
Acco06g1998 414 SMART sant 93 142 IPR001005 -
Acco06g1998 414 SMART sant 145 193 IPR001005 -
Acco06g1998 414 Pfam Myb-like DNA-binding domain 97 154 - -
Acco06g1998 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 144 IPR017930 -
Acco06g1998 414 Gene3D - 148 214 - -
Acco06g1998 414 SUPERFAMILY Homeodomain-like 91 187 IPR009057 -
Acco06g1998 414 PANTHER MYB PROTEIN-RELATED 94 233 - -
Acco06g1998 414 FunFam Transcriptional activator Myb isoform A 93 146 - -
Acco06g1998 414 CDD SANT 148 191 IPR001005 -
Acco06g1998 414 ProSiteProfiles Myb-like domain profile. 141 191 IPR001005 -
Acco06g1998 414 Gene3D - 93 145 - -
Acco06g1998 414 CDD SANT 97 140 IPR001005 -
Acco06g1998 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 195 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1998 Acco-ChrAcco06 14992124 14994542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1998 4 409 MYB Transcription Factor Family AT5G58850 38.987 1.55e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco06g1998 Myb_DNA-bind_6 3.5e-19 CL0123