Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1997 ATGGGAGCTAAGGTTATCACCGGCTCCTATTTTTATGGATTCTTGATTCTTCTTGCCTTGTTTGCTATCCTTGTGGATTCTTCCTGCAACGGCACCGACCAGGAGTTGGTCTCCAAGGCCTTTCAATCTGTCTCTGGCTTCAACATTTCCTGGTTCCATACACAAGGTCCTAACTGTTCAAAAGCTTCTCAGATTATTACTTCAATATCACTTTCTTCCAAGAATCTGAGCGGGGCTGTCTCTTGGGCTTTTATCAGGAATATGTCCAGCTTGCAGGTTCTTGATCTTTCTGGGAATTTCCTCCAAGGCCATGTACCTCGTTGGCTTTGGACATCTCCCAGCCTATCAAAAGTTGATCTTTCTAACAACAAGTTTGGAGGTAGCATTGAGCTGCAATTCCCCACGCGAAAAAACTCTTCGTTTTCATCGCTCCAAAGTCTCAATCTCTCACACAACAGGTTCACCAATCTCCTTCGACTTTCTGGGTTCTCGAACCTCAAAATTCTCGACTTCTCGCATAACAATTTGAGGACTCTCCCCTCTGAGTTCCAAAACCTCACCGGGCTACACTATCTCGACCTCTCAAGCTGCAACATCAAAGCAAGCGTAAAACCCATTTCTGCTCTCAGCTGGCTGAATTACTTGGACTTGTCAAACAACGCTTTCAATGGTAGTTTCCCTTCTGATTTCCCTCCTCTGGAAAACCTCAAGTTCTTCAACATTTCTCACAACAACTTCACTTCACTGGTTCACTTGGACAAATACAAAAAATTTGGAAACTCAGCTTTCATTGACGCCGGAAAAGGCTTCGCTCAGAATAAATCTAATACCCCCAGTCTTGATCCTCCTTCCTCTCGTGCTGTAAAAGCCTCGACGCACCACTACAAACACAAAACTCTGGTTGTGGCGGCGTCCTCTGTTTCAGCATGTGTGGTAGTTCTGTCGAGTATATGGTCGTTTTGCATTTACAGAAAGAAGAGAATACTGGCCAAGAAAAGGAAATGGGCAATCTCAAAACCGGTGCCTTTGGGAATAAAGTTGGAAAAATCGGGGCCTTTCACGTTCGAAACGGAGTCAGGAAGCTCGTGGGTGGCGGATTTGAAGGAGCCGTCGTCGGCGCCGGTGGTGATGTTCGAAAAGCCGTTGATGAACCTGAGCTTCAAGGACCTGATCGCTGCCACGTCGCACTTCGGCAAGGAGTCGCTGCTGGCGGAGGGAAGATGTGGGCCCGTGTACAGAGCCGTCGTCATCCCCGGCGACATCCACGTGGCAATCAAGGTGCTGGAGAATGCCAGAGCCGTCGACAGCGATGACGCAATCGCACTGTTCGCTGACCTGTCCAAACTTAAACACCCCAATTTATTGCCACCCTCTGGATATTGCATTGCAGGTAGTGAGAAGCTGATTTTGTACGAGTTTATGTCAAACGGGGATTTGGGGAGGTGGCTACGCGAGCTGCCAACGGGGCAAACCAACGTGGAGGATTGGACTAGTGACACGTGGGAGATTCAAAACGAATCCGGATCGCAGGTCTCTTCCCCGCCGGAGAAGATGAATTGGCTGACACGACACCGTATCTCCGTCGGGATTGCGCGCGGCCTGGCGTATCTTCACCACGCAGGGTCAAAGCCCGTCGTCCACGGCCATCTAGTGGCTTCAAATATCTTACTCGCCGACGACTTGGAGCCCCGGATCACCGATTTTGGGATCCGAAACATCGGGAAAGAGCAACAGAACCCAAACTGCACCACAGAGACGGACGTTTACTGCTTCGGTGTGGTGTTGATGGAGCTGTTAACGGGGAAGCCCGGCACAGCGGATACGGTGGTTCGGGTGAGAAAGGCGGTGAGGGAAGGTCATGGAGAGCGCGCATTGGACGAGAGGCTAAGACTAAGCTGCGACTGGGAAAGCGAGGTGCTGGATAGCCTGCGAGTGGCGTACTTGTGTACGGCCGAGTCACCCAGCAAAAGACCCACCATGCAACAGGTCCTGGGTTTGCTCAAAGACATTCACCCACACGACCCGAGCTGA 2031 0.5052 MGAKVITGSYFYGFLILLALFAILVDSSCNGTDQELVSKAFQSVSGFNISWFHTQGPNCSKASQIITSISLSSKNLSGAVSWAFIRNMSSLQVLDLSGNFLQGHVPRWLWTSPSLSKVDLSNNKFGGSIELQFPTRKNSSFSSLQSLNLSHNRFTNLLRLSGFSNLKILDFSHNNLRTLPSEFQNLTGLHYLDLSSCNIKASVKPISALSWLNYLDLSNNAFNGSFPSDFPPLENLKFFNISHNNFTSLVHLDKYKKFGNSAFIDAGKGFAQNKSNTPSLDPPSSRAVKASTHHYKHKTLVVAASSVSACVVVLSSIWSFCIYRKKRILAKKRKWAISKPVPLGIKLEKSGPFTFETESGSSWVADLKEPSSAPVVMFEKPLMNLSFKDLIAATSHFGKESLLAEGRCGPVYRAVVIPGDIHVAIKVLENARAVDSDDAIALFADLSKLKHPNLLPPSGYCIAGSEKLILYEFMSNGDLGRWLRELPTGQTNVEDWTSDTWEIQNESGSQVSSPPEKMNWLTRHRISVGIARGLAYLHHAGSKPVVHGHLVASNILLADDLEPRITDFGIRNIGKEQQNPNCTTETDVYCFGVVLMELLTGKPGTADTVVRVRKAVREGHGERALDERLRLSCDWESEVLDSLRVAYLCTAESPSKRPTMQQVLGLLKDIHPHDPS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1997 676 ProSiteProfiles Protein kinase domain profile. 397 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1997 676 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Acco06g1997 676 FunFam Putative LRR receptor-like serine/threonine-protein kinase 358 473 - -
Acco06g1997 676 Gene3D Phosphorylase Kinase; domain 1 357 473 - -
Acco06g1997 676 ProSiteProfiles Leucine-rich repeat profile. 235 256 IPR001611 GO:0005515
Acco06g1997 676 SUPERFAMILY L domain-like 59 250 - -
Acco06g1997 676 Gene3D Ribonuclease Inhibitor 136 265 IPR032675 -
Acco06g1997 676 SUPERFAMILY Protein kinase-like (PK-like) 387 670 IPR011009 -
Acco06g1997 676 Gene3D Transferase(Phosphotransferase) domain 1 474 674 - -
Acco06g1997 676 SMART LRR_typ_2 88 112 IPR003591 -
Acco06g1997 676 SMART LRR_typ_2 163 185 IPR003591 -
Acco06g1997 676 SMART LRR_typ_2 141 162 IPR003591 -
Acco06g1997 676 Gene3D Ribonuclease Inhibitor 32 135 IPR032675 -
Acco06g1997 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 60 670 - -
Acco06g1997 676 ProSiteProfiles Leucine-rich repeat profile. 143 164 IPR001611 GO:0005515
Acco06g1997 676 Pfam Leucine rich repeat 67 125 IPR001611 GO:0005515
Acco06g1997 676 Pfam Leucine rich repeat 143 199 IPR001611 GO:0005515
Acco06g1997 676 Pfam Protein tyrosine and serine/threonine kinase 401 574 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1997 Acco-ChrAcco06 14986981 14989460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1997 47 670 Receptor kinase-like Gene Family AT5G07280 29.851 3.57e-74 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Acco06g1997 PK_Tyr_Ser-Thr 1.2e-20 CL0016