LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g1992	ATGGCTGATGATAAGGAGATGTCTGCCTCTGTCAATGGGAACGAATCACTCACCGGTCACATCATATCTACAACAATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCAGAACGTGTTGTGGGAACTGGATCATTTGGGATTGTTTTCCAGGCAAAATGTTTAGAAACTGGTGAGGCAGTGGCCATTAAGAAAGTTTTACAAGACAGAAGATACAAAAATCGTGAATTACAATTAATGCGAGTGATGGACCATCCAAATGTGATCTCCTTGAAGCATTGTTTCTTTTCCACTACAAGTACAAATGAGCTATATCTGAATCTGGTGATGGAATATGTTCCCCAGAGCCTGTATCAGGTCATAATGCATTATAGCAATGCTAATCAGAGAATGCCACTTATGTATGTAAAACTTTATATGTACCAGATTTTCAGGGGTTTGGCTTATATCCACGCCATTCCAGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATATTGGTGGATACTCGTACACATCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAGAGGGGAATCTAATATATCATACATATGTTCACGCTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACCTCAATTGACATTTGGTCAGCTGGCTGTGTCCTAGCTGAACTTCTCTTAGGCCAGCCTTTGTTTCCTGGTGGAAGTGCAGTAGACCAGCTTGTGGAGATTATAAAGGTTCTTGGAACACCCACCCGGGAGGAAGTCCGTTGTATGAATCCCAATTATAATGATTTTAGGTTCCCCCAGCTAAAAGCACGCCCTTGGCATAAGATATTCGACAAAAGGATGCCTCCTGAAGCAATTGATTTTGTTTCCCGGCTTCTGCAGTACTCCCCAAGTCTTCGGTGCACTGCACTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGAGAACCTAATGCACGGCTGTCAAATGGGCGTCCATTACCAGTGCTATTCAACTTTGGACAGGAACTATCTGGAGCATCTCCAGAACTCATTAATAGGTTGATTCCGGACCATGTGAAGCGGCAAATAGGGCAATAA	1116	0.4265	MADDKEMSASVNGNESLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTNELYLNLVMEYVPQSLYQVIMHYSNANQRMPLMYVKLYMYQIFRGLAYIHAIPGVCHRDLKPQNILVDTRTHQVKLCDFGSAKVLVRGESNISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGGSAVDQLVEIIKVLGTPTREEVRCMNPNYNDFRFPQLKARPWHKIFDKRMPPEAIDFVSRLLQYSPSLRCTALEACAHPFFDELREPNARLSNGRPLPVLFNFGQELSGASPELINRLIPDHVKRQIGQ	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g1992	371	ProSitePatterns	Protein kinases ATP-binding region signature.	45	69	IPR017441	GO:0005524
	Acco06g1992	371	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	9	368	-	-
	Acco06g1992	371	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	160	172	IPR008271	GO:0004672\|GO:0006468
	Acco06g1992	371	ProSiteProfiles	Protein kinase domain profile.	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1992	371	FunFam	Glycogen synthase kinase-3 beta	23	118	-	-
	Acco06g1992	371	FunFam	Shaggy-related protein kinase kappa	119	366	-	-
	Acco06g1992	371	CDD	STKc_GSK3	34	326	IPR039192	-
	Acco06g1992	371	SUPERFAMILY	Protein kinase-like (PK-like)	38	347	IPR011009	-
	Acco06g1992	371	Pfam	Protein kinase domain	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1992	371	SMART	serkin_6	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1992	371	Gene3D	Phosphorylase Kinase; domain 1	24	118	-	-
	Acco06g1992	371	Gene3D	Transferase(Phosphotransferase) domain 1	119	366	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g1992	Acco-ChrAcco06	14925636	14929288	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g1992	45	361	MAP Kinase Gene Family	AT2G43790	36.086	2.23e-58	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Acco06g1992		Pkinase	5.9e-66	CL0016