Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1980 ATGAAAACACCACCGAGTAACGAAACGAAGGCCGGGAGGACGACGACGAAGAAGTCATCCTCCAGTAGAGGCCATCACAGGTTCGTTGGTGTTCGTCAGAGGCCGTCGGGAAGATGGGTGGCCGAGATCAAAGACTCGCTTCAGAAGGTCAGGCTCTGGCTCGGAACTTTCGACACTGCAGAAGATGCAGCTCGAGCCTACGACGCCGCCGCACGCGCCTTGCGTGGTGCAAATGCTCGCACTAACTTTGAACTGCCCGATCGTTCCATTGGCGGCGGCGGTTTTACGTACGCAGAGGACAACATGGAGCCCTTCTCGTTCGAGGATATGCCAGAGGCTGGTGCTGATTCAGATAATGGACTTGTTGGTGCTCTCAGAGCCAAATTGTGTGATGTCAAGGGAAAGACATCTTCAAAGCCTACCTCTATTATTGGGTCTAGTGTGACTTCGAACTCATCAACTACGCGTAATCATTGTGGGAGCACAGAAATATCAATACCCTCATCATCAAATCCATCCAAAGGTAAGAGAGTGAATATTGTTTCTGAACCTGTAGATCCTGAAACGACGACCATGAGGGGCGTGAACTTGGGCTGGTCCAACGATATTCCATGGCAGTCACACACGAGGACGAATCATGAGGGCTCTGAAAGTGGCTTGCTTGCCGATGCTGTTTGTGGAGGCACGGCTTCCTGGCCCTTTTCTGAGGCAGATCAGGAGCCGGAGTCCACCTTACATGGCGTCTTTAGTTCCTCTCCCAAGTTTTGTTCAGATCATGGTTTATCCAGCAGCAACGATGAGAATGGTCAAATGAAGAATGTGGTGAGCTTACAGATGAATCAAATTGGTGGAACGTCGTCGTCTGATCAGTGCTTGTGGATACCTGAGCAACAACAGTCGTTCGTGCACTGTGATAATCACAACAGTTGGTTTAGTTCCGGTGGCTCTTGA 951 0.5058 MKTPPSNETKAGRTTTKKSSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDAAARALRGANARTNFELPDRSIGGGGFTYAEDNMEPFSFEDMPEAGADSDNGLVGALRAKLCDVKGKTSSKPTSIIGSSVTSNSSTTRNHCGSTEISIPSSSNPSKGKRVNIVSEPVDPETTTMRGVNLGWSNDIPWQSHTRTNHEGSESGLLADAVCGGTASWPFSEADQEPESTLHGVFSSSPKFCSDHGLSSSNDENGQMKNVVSLQMNQIGGTSSSDQCLWIPEQQQSFVHCDNHNSWFSSGGS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1980 316 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Acco06g1980 316 MobiDBLite consensus disorder prediction 135 179 - -
Acco06g1980 316 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 204 - -
Acco06g1980 316 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Acco06g1980 316 SUPERFAMILY DNA-binding domain 28 84 IPR016177 GO:0003677
Acco06g1980 316 MobiDBLite consensus disorder prediction 135 177 - -
Acco06g1980 316 MobiDBLite consensus disorder prediction 1 33 - -
Acco06g1980 316 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Acco06g1980 316 FunFam ethylene-responsive transcription factor RAP2-11 26 85 - -
Acco06g1980 316 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Acco06g1980 316 MobiDBLite consensus disorder prediction 1 18 - -
Acco06g1980 316 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Acco06g1980 316 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Acco06g1980 316 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1980 Acco-ChrAcco06 14851979 14852929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1980 7 83 AP2-EREBP Transcription Factor Family AT5G19790 62.338 2.05e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco06g1980 AP2 9e-14 CL0081