Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1965 ATGGCTTCGGGGGCTATATTTTCGTCTCTGCGGCGGCGGAGGTCGCCGTCGTTGGAAGCCTTTCTTGCTCCAGTTGACCTCACAGATGTTGCCTTGGTTCAAACTCTCGTGTCCGTCGCTAGCCAGCTCGTCTCTTGCTTCTCCGGCCGCTCGTTCTTCTTCCAACGCAAGAATTCGCGGGCGCTTATCCGAAATGTCCAGGTGTTTCTGTTGCTTCTGGAGTATCTACGTGATAATAGAACGAATATACCGTTGACCGAGTTGGTTTGCCTTAAGGAGCTCTATCTTCTTCTGTATCGATCCAAGATTCTGCTTGACTATTGCGCGCAGTCGAGTAAGTTATGGCTTTTGCTTCAGAACCATTCAGTTTCTGGTCATTTCCATGATTTGAATAAAGAAATTTCGACTCTCTTAGATGTATTCCCAATTAAGGATGCTCAATTGAGTGAGGATATTAGAGAACAGATTGAGCTATTGCAGAAACAATCAAGGAGAGCTAAGTTATTTATTGACAAGAAAGACGATGAGCTCAGGATTGAGTTCTTGTCGTATCTCGAAGATTTTGAGAGTGGGCGAGTTCCTGACTCAGCTAGGCTACGATCATTTTTTTTGAAGAAATTGCAGATTCTTGATGCTAGGAGTTGTAGAACAGAAATTGAGTCGTTGGAGGAGCAGATTATTAACCATGAAGGAGATGTTGAGCCAACAATTTCTGTGCTTAATGGTTTGGTTGCTTTGACACGGTATTCTAGATTTTTGCTCTTTGGATTTGAGGAAGATGAACTTGAATTAGAAAATGGAAGCCAGATGAAAAAACTGAAGAAGGGACTGATTACTCAAGAAATTGCTGAAACATTTGTAACTGTTCCTAAGGACTTTTACTGCCCAATCTCGTTGGATCTGATGAGTGATCCAGTGATAATCTCCACAGGACAAACATATGATAGAAGCTCCATATCAAGGTGGTTGGAAGAAGGGCATTGTACTTGTCCAAAAACAGGACAAATGCTTGCCCACACTAAGCTTGTCCCGAATCGAGCTCTGAAGAATTTGATCATGAAGTTTAGCACTGCACATGGAATCACTCATGACTTGCTGGAGGCGATAGATGTAGCGCCAGATACCTTTCCAATGGCTTCTCCGTCGAAAGCCGCCCTCGAAGCCAACCGAGCAACGGCGCTGCTTCTCATTCAGCATCTGGAGAATGGATCACAAGCCACGGAGACTATAGCCGCCCGGGAGATACGATTGCTTGCGAAAACAGGCAAGGAAAACCGCGCATTCATTGCGGAAGCTGGGGCGATTCCTCGTCTTTGTAAACTACTTTCATCTCCTAATGCCGTTGCTCAGGAGAATTCAGTGACAGCATTGCTCAACCTGTCGATATATGAGAAGAACAAGAGCCGGATCATCGATGAAGAAGGTTGTCTGGAATCCATAGTTGATGTCTTGAGATTAGGTCTCACAAAAGAGGCAAGAGAGAATGCTGCAGCAACATTGTTCAGTCTCTCAGCAGTGCATGAATATAAGAAGAGAATTGCAGATAAGGCAGGAGCGATCGAGGCCCTGGCACAGCTTTTGCAAGAGGGAAACTTGAGAGGAAAGAAAGATGCAGTAACAGCCTTATTCAATCTTTCCACCCACACCGATAACTGTATTAGAATGATCGAAGCCGGAGCAATAACAGCTCTAGTTGGCACGTTGAGGACCGAAGGAGTGGCTGAGGAAGCAGCGGGCGCTCTTGCCTTGATTGTCCGGCAAACGATAGGAGCCAAGGCGGTGGTGGAAGAGGAAGAAGCAGTAGCTGGATTGATGGGAATGATGCGATGTGGAACGGCCCGAGGGAAAGAGAATGCCGTGGCAGCATTGCTGGAGCTGTGCCGGAATGGAGGCGTAACAGTAACCGAGAGGGTGGTGAAGGCACCAGCTTTGGCCGGATTGCTTCAAACCCTAATTTTCACAGGAACAAAGAGAGCCAGAAGGAAAGCAGCTTCACTTGCCAGAGTGTTTCAGAGTCGTGAAAATGCTTCTCCATATTATGGTGGACTGGGTGTAAGATATGCATATGCTAGTAATTCAGCTACTGGCAGAGATACAACTTTTGCAGGGGATGTTTCAGTACCAATGTCTATTTCTGTGCGTGTCTTGTAA 2151 0.4603 MASGAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLVSVASQLVSCFSGRSFFFQRKNSRALIRNVQVFLLLLEYLRDNRTNIPLTELVCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSVSGHFHDLNKEISTLLDVFPIKDAQLSEDIREQIELLQKQSRRAKLFIDKKDDELRIEFLSYLEDFESGRVPDSARLRSFFLKKLQILDARSCRTEIESLEEQIINHEGDVEPTISVLNGLVALTRYSRFLLFGFEEDELELENGSQMKKLKKGLITQEIAETFVTVPKDFYCPISLDLMSDPVIISTGQTYDRSSISRWLEEGHCTCPKTGQMLAHTKLVPNRALKNLIMKFSTAHGITHDLLEAIDVAPDTFPMASPSKAALEANRATALLLIQHLENGSQATETIAAREIRLLAKTGKENRAFIAEAGAIPRLCKLLSSPNAVAQENSVTALLNLSIYEKNKSRIIDEEGCLESIVDVLRLGLTKEARENAAATLFSLSAVHEYKKRIADKAGAIEALAQLLQEGNLRGKKDAVTALFNLSTHTDNCIRMIEAGAITALVGTLRTEGVAEEAAGALALIVRQTIGAKAVVEEEEAVAGLMGMMRCGTARGKENAVAALLELCRNGGVTVTERVVKAPALAGLLQTLIFTGTKRARRKAASLARVFQSRENASPYYGGLGVRYAYASNSATGRDTTFAGDVSVPMSISVRVL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1965 716 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
Acco06g1965 716 SUPERFAMILY RING/U-box 277 361 - -
Acco06g1965 716 Pfam Armadillo/beta-catenin-like repeat 516 546 IPR000225 GO:0005515
Acco06g1965 716 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Acco06g1965 716 SUPERFAMILY ARM repeat 395 670 IPR016024 -
Acco06g1965 716 Gene3D - 377 487 IPR011989 -
Acco06g1965 716 SMART arm_5 507 547 IPR000225 GO:0005515
Acco06g1965 716 SMART arm_5 422 462 IPR000225 GO:0005515
Acco06g1965 716 SMART arm_5 463 505 IPR000225 GO:0005515
Acco06g1965 716 SMART arm_5 548 586 IPR000225 GO:0005515
Acco06g1965 716 PANTHER U BOX DOMAIN-CONTAINING 57 670 - -
Acco06g1965 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Acco06g1965 716 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Acco06g1965 716 Gene3D - 489 675 IPR011989 -
Acco06g1965 716 FunFam RING-type E3 ubiquitin transferase 367 686 - -
Acco06g1965 716 Coils Coil 212 232 - -
Acco06g1965 716 CDD RING-Ubox_PUB 290 342 IPR045210 -
Acco06g1965 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Acco06g1965 716 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Acco06g1965 716 FunFam RING-type E3 ubiquitin transferase 288 363 - -
Acco06g1965 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 364 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1965 Acco-ChrAcco06 14717145 14719295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1965 1 715 U-box Gene Family AT1G29340 67.579 0.0 936