Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1963 ATGGATGAAGCTCAGGGCAGTTCTGGCGCCCTGCCTCCTTTCCTGACAAAGACTTATGAGATGGTGGACGATCCTTCCATAGATTCGATTGTTTCCTGGAGTGCCTCTAACAAAAGTTTCATAGTATGGAATCCTCCAGAATTTGCAAGTGAGTTGCTTCCAAGATTCTTTAAGCACAATAACTTCTCTAGTTTCATCAGACAGCTGAACACATATGGTTTTAGAAAAGTTGATCCAGAACAATGGGAATTTGCAAATGATGATTTCATAAGAGGTCAACCGCATCTTTTGAAGAATATATATAGACGAAAGCCAGTTCATAGTCATTCTCCACAGAATCTCCAAGGACAAGGAACTTCTCCATTAGCAGAACCAGAAAGACAGAGTTTAAAAGGCAAAATAGAGAGTCTGAAACATGAAAATGAACGACTTTGTCTAGAGTTAGAGAGACACGAGCAGGAGTGGAAAGCAAATGAAATTAAAATAGGATGCTCAAAGGAGAGATTGGGAAAGTTGGAAAGGAAACAACAAAAGATGGTCTCTTCTGTTTCTCAAGCGTTGCAGAAACCTGGAATTGCCTCAAACCTCTTGCAAATGTCAGAAACCCTGTATAGAAAACGAAGGTTGCCACGAGGTGGTTACTTTTGTGATGAGGCTGTAATTGAAGATGCTACAGAATCCTCTTCAGTGATACCTAGAGATAATGCAGATATAACTTCTATTTTGTCATCAATTGTGGAGAGAATGGAACAGTTGGAATCATTGCTGTTATTTTGGGAGAACTTTGCTCTTGATTTTGGTGATTCCTTTGTTCATAGCCATTCAAATATGGATCTTGATGAATCTACAAGTTGTGTTGATAGTCCTGCTCTCTCTTGTATGCAACTTGATGACGAACTTCACCCCATGTCATCAGGAATTGACATGAACTCTGAGCCAGCTGGAGCTACTATTTCTGATCCTGGTTCATCAAAAGAAAAACCTGTGGGAACAACCACTGTAGCAGCTGGAGTCAATGATGTATTCTGGGAACAGTTCTTGACAGAGAATCCTGGTTCTTCAGAAACACGTGAAGTACAGTCAGAGCAAAGGGATTCTGATGGCAGAAAGAATGAAGTAAAACCTAGTGAGCGGAGTAAACTTTGGTGGAGCATGAACAATGTAAATAGTCTTTCAGAACAGATGGGGCATCTTAGCCAAACAGAGAAAACTTAA 1215 0.4033 MDEAQGSSGALPPFLTKTYEMVDDPSIDSIVSWSASNKSFIVWNPPEFASELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQPHLLKNIYRRKPVHSHSPQNLQGQGTSPLAEPERQSLKGKIESLKHENERLCLELERHEQEWKANEIKIGCSKERLGKLERKQQKMVSSVSQALQKPGIASNLLQMSETLYRKRRLPRGGYFCDEAVIEDATESSSVIPRDNADITSILSSIVERMEQLESLLLFWENFALDFGDSFVHSHSNMDLDESTSCVDSPALSCMQLDDELHPMSSGIDMNSEPAGATISDPGSSKEKPVGTTTVAAGVNDVFWEQFLTENPGSSETREVQSEQRDSDGRKNEVKPSERSKLWWSMNNVNSLSEQMGHLSQTEKT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1963 404 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g1963 404 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g1963 404 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g1963 404 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g1963 404 FunFam Heat shock transcription factor 1 7 104 - -
Acco06g1963 404 MobiDBLite consensus disorder prediction 310 330 - -
Acco06g1963 404 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
Acco06g1963 404 MobiDBLite consensus disorder prediction 107 124 - -
Acco06g1963 404 MobiDBLite consensus disorder prediction 301 330 - -
Acco06g1963 404 Coils Coil 127 154 - -
Acco06g1963 404 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g1963 404 Gene3D - 7 104 IPR036388 -
Acco06g1963 404 MobiDBLite consensus disorder prediction 107 128 - -
Acco06g1963 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 253 IPR027725 -
Acco06g1963 404 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco06g1963 404 MobiDBLite consensus disorder prediction 358 377 - -
Acco06g1963 404 MobiDBLite consensus disorder prediction 347 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1963 Acco-ChrAcco06 14708468 14709795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1963 7 404 HSF AT4G18880 52.346 1.16e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco06g1963 HSF_DNA-bind 1e-31 CL0123