Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1950 ATGGAGTCGAAAAGCAACCCAGCCAGGTTTACACTGGGGAGGCAATCATCGATGGCCCCGGAGAGGCATGGCGACGAACCGGAGCTGCATCAAGAGGGTGATGGCCTTGAAGGTATGGATCCGCGATTTAGGCTGATGTGTTTGGCCAATGAAGGCGATCTGGATGGTGTTCGTGAGCTATTAAATTCGGGGGTTAGTGCTAATTACAGAGATATTGATAATCGCACGCCTCTTCATGTTGCGGCCTGTCAGGGATTGATTGATGTGGTTGCTCTGTTGCTCGAAAAGGGGGCTGTGGTTGATCCACAAGATCGCTGGGGGAGCACGCCTCTTGCAGATGCTATACATTATAAAAACAACGATGTGGTCAAATTATTGGAGAAGCATGGAGCAAAGCCTCTGATGGCCCCTATGCATGTTAACCATGCACGGGAAGTACCAGAATATGAAATTGATCCTAAGGAGCTTGATTTTACCAACAGTGAGGAGTTAACTAAGGGAACTTTCTGTAGTGCCTTGTGGCGTGGAACAGAGGTTGCTGTGAAAAAGCTTGGGGATGATGTCATTACTAATGAGGACAAAGTGAAGGCCTTTAGAGATGAGCTTGCGTTGTTTCAGAAGATTCGGCACCCTAATGTGGTCCAATTTCTGGGTGCTGTGACTCAGAGCAGTCCAATGATGATTGTGATAGAATATCTTCCCAAGGGAGATCTTTGTGCATTCTTGAAAAGAAAAGGTGCTTTGAGACCATCAACGGCAGTGAGATTTGGTCTTGATATTGCTAGGGGAATGAACTATTTGCATGAAAATAAGCCATCGCCAATAATTCATCGTGATCTTGAGCCCTCTAATATATTGCGGGATGATTCGGGCCACCTAAAAGTTGCAGACTTTGGGGTCAGCAAATTGCTGGCAGTTAAAGAAGATAAGCCACTAACCTGCCTAGAGGCTTCTTGCCGCTATGTGGCTCCAGAGGTTTTCAATCAAGAAGAGTATGACACCAAAGTGGATGTTTTCTCATTTGCTTTAATTCTGCAAGAGATGATAGAGGGCTGCCCCCCATTTAGTGCAAAGCAAGATGATGAGGTCCCTAAGGTATATGCTGCAAAAGAGCGTCCTCCTTTCAGAGCTCCAGCCAAGCGTTATGCCCATGGACTGAGAGAATTGATTGAAGAGTGCTGGAATGAGAATCCAATAAAGAGGCCAACATTTAGGCAAATAATAACTAGGCTTGAATCCATTTATACCAAACTTGCTCATAAAAAACGATGGAAGGTTAGGCCGCTGAAATGCTTCCAGAATCTGGAAGCCATGTTGAAGAGAGATAACTCAAATCCAAGCAGTCGGGGCGGCTCATCACGTTCTACAGCCAGCGGTTTGTGA 1383 0.4591 MESKSNPARFTLGRQSSMAPERHGDEPELHQEGDGLEGMDPRFRLMCLANEGDLDGVRELLNSGVSANYRDIDNRTPLHVAACQGLIDVVALLLEKGAVVDPQDRWGSTPLADAIHYKNNDVVKLLEKHGAKPLMAPMHVNHAREVPEYEIDPKELDFTNSEELTKGTFCSALWRGTEVAVKKLGDDVITNEDKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVIEYLPKGDLCAFLKRKGALRPSTAVRFGLDIARGMNYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCLEASCRYVAPEVFNQEEYDTKVDVFSFALILQEMIEGCPPFSAKQDDEVPKVYAAKERPPFRAPAKRYAHGLRELIEECWNENPIKRPTFRQIITRLESIYTKLAHKKRWKVRPLKCFQNLEAMLKRDNSNPSSRGGSSRSTASGL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1950 460 FunFam Integrin-linked protein kinase family 26 149 - -
Acco06g1950 460 Gene3D - 15 149 IPR036770 -
Acco06g1950 460 PIRSF ILK 2 434 - -
Acco06g1950 460 MobiDBLite consensus disorder prediction 19 37 - -
Acco06g1950 460 ProSiteProfiles Protein kinase domain profile. 158 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1950 460 Gene3D Phosphorylase Kinase; domain 1 150 233 - -
Acco06g1950 460 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Acco06g1950 460 FunFam serine/threonine-protein kinase STY46-like 151 234 - -
Acco06g1950 460 SUPERFAMILY Ankyrin repeat 44 135 IPR036770 -
Acco06g1950 460 Pfam Protein tyrosine and serine/threonine kinase 173 411 IPR001245 GO:0004672|GO:0006468
Acco06g1950 460 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Acco06g1950 460 CDD STKc_MAP3K-like 167 411 - -
Acco06g1950 460 FunFam Os01g0748600 protein 144 431 - -
Acco06g1950 460 SUPERFAMILY Protein kinase-like (PK-like) 151 412 IPR011009 -
Acco06g1950 460 Gene3D Transferase(Phosphotransferase) domain 1 234 452 - -
Acco06g1950 460 SMART ANK_2a 73 102 IPR002110 GO:0005515
Acco06g1950 460 SMART ANK_2a 37 69 IPR002110 GO:0005515
Acco06g1950 460 SMART ANK_2a 106 135 IPR002110 GO:0005515
Acco06g1950 460 MobiDBLite consensus disorder prediction 440 460 - -
Acco06g1950 460 MobiDBLite consensus disorder prediction 1 37 - -
Acco06g1950 460 Pfam Ankyrin repeats (3 copies) 45 133 IPR002110 GO:0005515
Acco06g1950 460 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 149 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1950 Acco-ChrAcco06 14617995 14623461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1950 1 432 MAP Kinase Kinase Kinase AT4G18950 67.816 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Acco06g1950 PK_Tyr_Ser-Thr 8e-53 CL0016