Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1949 ATGGATTTTCAAAACCAATCCATGTCAGTTTCTTCACCTCAGAGGAAGACAGGAAGGGGAAAGATTGAAATCAAGAGGATTGAGAACAACACAAATCGCCAAGTCACCTTCTGCAAACGCAGAAATGGACTGCTCAAGAAAGCTTATGAACTATCTGTTCTCTGTGATGCTGAAGTAGCTTTAATCGTCTTCTCAACCCGTGGTCGCCTCTATGAGTATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTACAAGAAAGCATGTTCAGATTCTACTGGTGGATCTACTTCTGAAGTTAATGCTCAGTACTATCAACAAGAATCTGCCAAACTGCGTGCTCAGATTAGTAACCTGCAGAATCACAACAGGCAAATGATGGGAGAGGGTTTGGGCAATCTGAACTCGAAGGATCTCAAAAACCTGGAGGGTAGGTTAGAAAGAGGGATCAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTATTTGCAGAAATTGAATACATGCAGAAGAGGGAAATAGACTTGCATAACAACAATCAACTTCTTCGATCAAGGATAGCTGAAAGTGAGAGGAACCAGCAGCAAAACATGAATGTAGTGGGAGGAGGAGGGTCAGAGTATGAATCCATGCAATCTCATCAGCAGCAGCAATTTGAGAATAGAGGTTACTTTCAGGTCACTGCATTACAACCCAATCATCACTACCAAGACCACATGGCCCTCCAATTAGTGTATGGTTTCTTCATCACTTTCCTACTTTCTATTTATTCCCTTCTTTATTTCTATTCTTTCTAA 795 0.4101 MDFQNQSMSVSSPQRKTGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIDRYKKACSDSTGGSTSEVNAQYYQQESAKLRAQISNLQNHNRQMMGEGLGNLNSKDLKNLEGRLERGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRSRIAESERNQQQNMNVVGGGGSEYESMQSHQQQQFENRGYFQVTALQPNHHYQDHMALQLVYGFFITFLLSIYSLLYFYSF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1949 264 FunFam agamous-like MADS-box protein AGL11 29 111 - -
Acco06g1949 264 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Acco06g1949 264 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco06g1949 264 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco06g1949 264 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Acco06g1949 264 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Acco06g1949 264 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Acco06g1949 264 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Acco06g1949 264 MobiDBLite consensus disorder prediction 1 21 - -
Acco06g1949 264 Coils Coil 139 159 - -
Acco06g1949 264 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Acco06g1949 264 Coils Coil 102 129 - -
Acco06g1949 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 202 - -
Acco06g1949 264 Gene3D - 29 117 IPR036879 GO:0003677|GO:0046983
Acco06g1949 264 MobiDBLite consensus disorder prediction 1 16 - -
Acco06g1949 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Acco06g1949 264 SUPERFAMILY SRF-like 18 95 IPR036879 GO:0003677|GO:0046983
Acco06g1949 264 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1949 Acco-ChrAcco06 14585449 14592998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1949 15 244 MADS-box Gene Family AT3G58780 67.234 8.76e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco06g1949 K-box 8.2e-27 No_clan