Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1902 ATGGATGTCCCAAATAATAGCTCAACTGCCAGCGGTTCAACGATAGAATTTGAGTGGGGTGCATCTGTTCATGCTACACTGAATCCAATGAATGAAGTTGGTTATGAACTTGAGGTCAATGCAATGAAGCAGTCTTTTGACATTTCGGCTTCTGGTCCAACCCAGATTTCGTCTGTAAATATTCCTAAAGAAGTGGGACACAATGCTTGGGAGGTTTTATCTGGATCTGATGCCTACCATGCCTCATTGGATGCTAGCCTTTTTTCTAGCTCATTACCAGTTTTGTCACATGAAAAGTTGAACTTGAATGATACTGAAAATGAGTATCAGTATGTGGATGACATCTCATCTGGCTTTAAAAAGCATCACCAAGATTTGGGGGTTAATGAATCACTTGAAGATACTAATATTCATGCACTTGGAACAACGCTTCCAGATGATGAGGAGGAGCTTCTAGCTGGCATAACGGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCCTAGAGGATTTGGAAGATTATGATCTTTTTGGTAGTGGTGGAGGAATGGAACTGGAAATTGATCCCAAGGAAAGTCTTACAGTGGGCATTTCAAAATTAGGTTTCTCTGATAGCATAGCTGGCAACGGTTTGCCCCATTACTCTCTTCCTAATGGTGTTGGAACAGTTGCTGGCGAACATCCTTATGGGGAGCATCCTTCTCGAACTTTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAGAGCCCTTTTTGAGCAATACGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGTATTGCAAAACAAACCACTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATGAATCAAGGAACTTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGACAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTGAACAGGAGTGACATTGCGGGTAAACGTATAAAGCTGGAACCTAGCCGTCCTGGTGGAGCCCGTCGAAATTTGATGCTCCAACTAAATCAAGATCTTGATCAAGATGAATCTCGGAATTTTCGACATCAGGTGGGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGATGCAGTTTAGCAGCCCCATTGAACATAAGTCAATGCAATCGCTCAACAATTCTCCTGGTTCAAGGATTATGAGCCCAACAATTGGCAACCATTTACCAGGATTAGCTTCAATCTTGCAATCTCAAGGATCTAACTCTCTAAAGGCTGTAGCTATTGGTAAGGATCTAGGAAGGAATAGTCATGGAGATAACATATTTAGTAATTGCAATTCATCACATGGAGCTGCATTTCAATCTCACTCGCTTCCAGAACCAACATTCGGTCAATATCATGGAGCTTTGTCCTCTTTTGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAACTTATACTCTGAGCACACCAAACCTTCACCACCTTGGCCTAGATCATCTGTAGCGCCTCCATTAACATCAAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCTCAGCATCATCTTCATCAACATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGTCCTTTGGTTTTTTTCCTGAATCTCCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTGGGACACAAGGATGGAAACTACATGCTTAACATGGGCGGATCTGTTAATGCTGGCCTTACAATACCAAGGAATGTGTCTGAAAATGTTCAATCAAACTTTAGAATGAGAACTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGCAATAGTCCTTACCCTGGCCTGCCACCCACTGCCCTAGATGGTTTGACTGACCATGGAAGGAGTAGACGGCTTGATAACAATAGTAACCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATGCCAGGACCACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCTGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTTTCACCTTCTCTTATCATTCCATTCTACGAGACATTTAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGGAAGGCTGCCCTTGTGGGCCACTTCCAGAATTCAAGCTTGATGAATGAAGACAGGCGATGTCGCCCTATTCTTTTCCACTCGGAGGGTCCTGAAGCTGGTGATCAGATCGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAGGTCCTCAAGTCAAGTGATTCTCATTTGAATGACTCTCTTGGAAGCCCCTTAAAGGATAACCCTCCTGTGAACTTAGAGACAAGTTAA 2706 0.4202 MDVPNNSSTASGSTIEFEWGASVHATLNPMNEVGYELEVNAMKQSFDISASGPTQISSVNIPKEVGHNAWEVLSGSDAYHASLDASLFSSSLPVLSHEKLNLNDTENEYQYVDDISSGFKKHHQDLGVNESLEDTNIHALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGSGGGMELEIDPKESLTVGISKLGFSDSIAGNGLPHYSLPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRVLQNKPLRRRKLDIHFSIPKDNPSDKDMNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESRNFRHQVGSPVANSPPGNWMQFSSPIEHKSMQSLNNSPGSRIMSPTIGNHLPGLASILQSQGSNSLKAVAIGKDLGRNSHGDNIFSNCNSSHGAAFQSHSLPEPTFGQYHGALSSFGPSTSNGSSVETLSGPQFLWGNSNLYSEHTKPSPPWPRSSVAPPLTSNGKGHGFPYSGQNGSFVGSSQHHLHQHVGSAPSGVPFERSFGFFPESPETSFMNHVGYGGINVGHKDGNYMLNMGGSVNAGLTIPRNVSENVQSNFRMRTSPRLSPVFLGNSPYPGLPPTALDGLTDHGRSRRLDNNSNQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVGHFQNSSLMNEDRRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQVLKSSDSHLNDSLGSPLKDNPPVNLETS 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1902 901 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 387 IPR000504 GO:0003723
Acco06g1902 901 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 301 IPR000504 GO:0003723
Acco06g1902 901 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 393 IPR000504 GO:0003723
Acco06g1902 901 SMART rrm1_1 321 389 IPR000504 GO:0003723
Acco06g1902 901 SMART rrm1_1 236 304 IPR000504 GO:0003723
Acco06g1902 901 SMART rrm1_1 739 815 IPR000504 GO:0003723
Acco06g1902 901 Gene3D - 320 416 IPR012677 -
Acco06g1902 901 CDD RRM1_MEI2_like 234 310 IPR034453 -
Acco06g1902 901 SUPERFAMILY RNA-binding domain, RBD 739 824 IPR035979 GO:0003676
Acco06g1902 901 CDD RRM3_MEI2_like 740 825 IPR034454 -
Acco06g1902 901 FunFam Protein MEI2-like 1 319 414 - -
Acco06g1902 901 FunFam MEI2-like protein 5 isoform 2 224 318 - -
Acco06g1902 901 SUPERFAMILY RNA-binding domain, RBD 232 394 IPR035979 GO:0003676
Acco06g1902 901 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 308 IPR000504 GO:0003723
Acco06g1902 901 CDD RRM2_MEI2_like 319 389 - -
Acco06g1902 901 MobiDBLite consensus disorder prediction 558 584 - -
Acco06g1902 901 Pfam RNA recognition motif 2 737 833 IPR007201 -
Acco06g1902 901 MobiDBLite consensus disorder prediction 881 901 - -
Acco06g1902 901 Gene3D - 224 319 IPR012677 -
Acco06g1902 901 PANTHER RNA RECOGNITION MOTIF-CONTAINING 85 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1902 Acco-ChrAcco06 13959736 13965572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1902 230 433 Eukaryotic Initiation Factors Gene Family AT1G71770 25.751 6.84e-06 48.1