Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1881 ATGTCTCCAAAGATCAGTTTGACTATAATCATAGTCTTCTTGTTCATTTCAATTTCAACTACTATACTTTCAAATGCAGAACCAAGCTCACTGGAAGAAGTTGAAATTGAAGCTTTGAAAGCTTTCAAAAGCTCAATCACTCATGACCCAAATGGAGCATTGGCTGATTGGGTTGACACAACCCGTCATTGCAACTGGTCTGGCATTGCTTGTGATCCATCTTCACAACATGTTATCTCAATCACTAAGACTGGCAAGAAGCTCCAAGGTAAGATTTCACCATTCCTGGGCAATCTTTCTGGCCTCCAGCTTCTTGACTTGACCTCAAATTCTTTTTCTGGGCTCATTCCTCCTCAACTCAGCTTTTGTTCCCAGCTTTCTCAATTGTATCTTGTTGACAACTCTCTCTCTGGTCCAATCCCACCTGAGCTAGGAAACTTGAAAGGTCTTCAGTATTTGGATTTGGGCAGTAACATTCTGGCTGGAAGCCTCCCAGGAAGCTTGTTTAACTGCACCTCTTTGTTGGGTATTGCTTTTAATTCAAACAATCTGACTGGTAAAATCCCTTCAAATATTGGCAACTTGGTTAATGTTACACAAATTGCAGGATTTGCTAATCAGTTTGTTGGGTCCATTCCTCCTTCCATAGGGAAGTTAGGGGCTTTACAATCTCTAGATTTTAGTCAAAACCAGTTGTCAGGAGAGATACCTAGAGATATTGGGAATCTAGGAAACTTAGAATATCTTCTCTTATTTGAAAATTCCTTGGTTGGAAAAATCCCTTCTGAACTTGGTCAGTGCATGAACCTAGTGCACCTTGAACTGTACACAAATAAGCTGTCTGGAAGCATTCCTCTTGAGCTAGGAAACTTAGTTCATTTGGAAACATTAAGGATATATGATAATAACTTCACCTCCACAATTCCTTCTTCCATTTTCCAGCTGAAATCACTAACCAACTTGGGTCTGTCAGAGAATCGGTTAGAGGGAACAATATCTCCTGAAATTGGATCTTTGAGATCACTTAAAGTTCTAACCCTGCATTTAAATAAGTTTACTGGACAAATTCCTTCTTCAATCACAAACTTGTCAAACTTAACATATCTCTCAATGAGCCAGAATCTCCTTTCAGGAAAACTTCCTTCCAACATAGGATTGCTTCATAATTTGAAGATTCTAGTCCTAAATGGAAACTTTTTGAATGGTGATATCCCACCTAGTATCACCAATTGTACTAGTTTGGTGAATGTAAGTTTGTCCTTTAATTCACTAAGTGGGAACATTCCTGAAGGCTTTTCAAGGATGTCTAATCTTACTTTTTTATCTTTGGCGTCAAACAACATGTTTGGTGAAATCCCAGATGATCTCTTCAACTGCTCAAATCTTCGAACTCTAAGTTTGGGTAAGAACAATTTCAGTGGGATGCTAAAACCTGCAATCAAAAACCTATTCAATCTCAGGACCCTTCAGATGAATTTAAATTCTTTCACAGGGCCTATTCCACTTGAGATAGGGAATTTAAATCAACTTGTGACATTATCACTTTCTAATAATAGATTTTCTGGTCACATTCCATTAGAGCTATCCAACCTCACTCTTCTTCAGGGTCTCAACTTGCAAGACAATGCATTAGAAGGAACAATACCTAATCAGTTATTTGAACTGAATCAACTAACCGTGCTTCAGCTATATCGGAACAAGCTGGTTGGTCAAATCCCAAAGGCTTTCTCCAAACTTAAGATGCTTTCTCACTTAGACCTCCATGGGAACATGTTCAATGGATCAATTCCAAGCGAGTTGAGTCAACTCAACCAGCTCTTAATGTTGGATCTGTCACAGAACCACTTGACAGGGTCAATTCCTGGGGATGTCATTACATCTTTTAGAGACATGCAGCTATATCTCAACTTGTCTCATAACCACTTTATTGGAGCAATTCCGGAAGAGCTGGGTATGATGGAAATGATACAAGCCATTGATGTTTCAAACAACAATCTGTCTGGTGTCATTCCCAAGGCACTTTCAGGGTGCAAGAATCTATATAATCTTGACCTTTCAGGAAACAATATCTCAGGTCCTATTCCAGCACAGGCTTTCAATAACATGGATTTGCTCCAAAGCTTGAACCTTTCAAGGAACCATTTAGATGGAGAAATCCCTGAGACATTGGCAAAGCTTGAGCATCTTATTTCCTTGGATCTTTCTCACAATAACTTGGAGGGATCTATCTCTGATAATTTTGCCAATCTCTCCAACCTAAGGCTTCTCAACCTTTCTTTCAACCGACTTGAAGGTCAAGTTCCATCAAGCGGAATATTCTCACATATAGATGCATCTGCTTTGATGGGAAACCCTGCTCTTTGTGGAACTAAATTCTTGATGCCATGTAGGGAAACAACAAGGAGATCTCATTCACTATCCAAGAAGAGCATATATATTATTGCCTCACTTGGATCTGTTGCTGTCTTCCTAATTTTGGTATTGGTGATTCTATTTCTCATACAACGCGCCAGATCACGCCGTTCTAACAAGCTTGAGAATCATGAAATACCTAACTACACTCCAACCTTGACACTTGAAAGATTTGAGAGAAAGGACCTAGAAAATGCTACTAGTTGTTTCAGCTCAGATAACATCGTTGGAGCTAGCAATTTGAGCACTGTTTATAAGGGTCAATTGGGAGATGGCAGGATAGTGGCAATAAAAAAACTGAACTTGGAGCATTTTTCTGTAGAATGTGACAAACATTTCAAGAGAGAAACAAGCATCTTGAGCCAACTAAGGCATAGGAATTTGGTCAAGGTTCTGGGGTATGCTTGGGAGAGTGGGAAAATAAAGGCTCTCGTTTTGGAGTACATGCAGAGCGGGAATTTGGATATCGTAATACATGATGAAGGGATGATGGATCAAAGTAGATGGACATTATTTGAAAGGCTTAATGTTTTGATTTCTGTTGCTGATGCATTGGATTACTTACACTCTGGTTATGATATTCCAATTGTGCATTGTGATTTAAAGCCTTCTAATATTCTTTTGGATGGGGACTGGGTGGCCCGTGTGAGTGATTTTGGGACAGCTAGAATGCTTGGTCTCCATTTGCAAGATGGGGCTTCTTTGTCCTCATCAGCAGCTTTCCAAGGCACTGTTGGTTATTTGGCTCCAGAGCTTGCGTATATGAGGAAATTAACGACCAAGGTTGACGTGTTCAGCTTTGGTATAGTAGTAATGGAGTTTCTAACGAGACGGAGACCAACAGGGATTGCAGAAGAAGATGACTTGCCCATAAGTCTGCGGGAAATAGTGCAGAAAGCACTTGCCAATACTGGAACGAAGCAACATGTTCTTCAAGTTGTGGATCCTTTGCTCTTTGACAAGGAGCTGCATGAAGATGTCTTAATGGAGCTTTTGAAGCTATCACTGAATTGTACTCTCCCTGATCCTGAAGATCGACCTAATATGAAACAAGTGTTGCATGTCTTGATGATGCTTAAGAAGCAAATATCATAG 3507 0.3986 MSPKISLTIIIVFLFISISTTILSNAEPSSLEEVEIEALKAFKSSITHDPNGALADWVDTTRHCNWSGIACDPSSQHVISITKTGKKLQGKISPFLGNLSGLQLLDLTSNSFSGLIPPQLSFCSQLSQLYLVDNSLSGPIPPELGNLKGLQYLDLGSNILAGSLPGSLFNCTSLLGIAFNSNNLTGKIPSNIGNLVNVTQIAGFANQFVGSIPPSIGKLGALQSLDFSQNQLSGEIPRDIGNLGNLEYLLLFENSLVGKIPSELGQCMNLVHLELYTNKLSGSIPLELGNLVHLETLRIYDNNFTSTIPSSIFQLKSLTNLGLSENRLEGTISPEIGSLRSLKVLTLHLNKFTGQIPSSITNLSNLTYLSMSQNLLSGKLPSNIGLLHNLKILVLNGNFLNGDIPPSITNCTSLVNVSLSFNSLSGNIPEGFSRMSNLTFLSLASNNMFGEIPDDLFNCSNLRTLSLGKNNFSGMLKPAIKNLFNLRTLQMNLNSFTGPIPLEIGNLNQLVTLSLSNNRFSGHIPLELSNLTLLQGLNLQDNALEGTIPNQLFELNQLTVLQLYRNKLVGQIPKAFSKLKMLSHLDLHGNMFNGSIPSELSQLNQLLMLDLSQNHLTGSIPGDVITSFRDMQLYLNLSHNHFIGAIPEELGMMEMIQAIDVSNNNLSGVIPKALSGCKNLYNLDLSGNNISGPIPAQAFNNMDLLQSLNLSRNHLDGEIPETLAKLEHLISLDLSHNNLEGSISDNFANLSNLRLLNLSFNRLEGQVPSSGIFSHIDASALMGNPALCGTKFLMPCRETTRRSHSLSKKSIYIIASLGSVAVFLILVLVILFLIQRARSRRSNKLENHEIPNYTPTLTLERFERKDLENATSCFSSDNIVGASNLSTVYKGQLGDGRIVAIKKLNLEHFSVECDKHFKRETSILSQLRHRNLVKVLGYAWESGKIKALVLEYMQSGNLDIVIHDEGMMDQSRWTLFERLNVLISVADALDYLHSGYDIPIVHCDLKPSNILLDGDWVARVSDFGTARMLGLHLQDGASLSSSAAFQGTVGYLAPELAYMRKLTTKVDVFSFGIVVMEFLTRRRPTGIAEEDDLPISLREIVQKALANTGTKQHVLQVVDPLLFDKELHEDVLMELLKLSLNCTLPDPEDRPNMKQVLHVLMMLKKQIS 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1881 1168 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 953 1168 - -
Acco06g1881 1168 Pfam Protein kinase domain 876 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1881 1168 FunFam Leucine-rich receptor-like protein kinase family protein 500 598 - -
Acco06g1881 1168 SUPERFAMILY RNI-like 345 765 - -
Acco06g1881 1168 Gene3D Phosphorylase Kinase; domain 1 834 952 - -
Acco06g1881 1168 SUPERFAMILY Protein kinase-like (PK-like) 852 1163 IPR011009 -
Acco06g1881 1168 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 32 186 - -
Acco06g1881 1168 CDD STKc_IRAK 880 1161 - -
Acco06g1881 1168 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1000 1012 IPR008271 GO:0004672|GO:0006468
Acco06g1881 1168 FunFam Piriformospora indica-insensitive protein 2 286 381 - -
Acco06g1881 1168 Pfam Leucine Rich Repeat 728 750 IPR001611 GO:0005515
Acco06g1881 1168 Gene3D Ribonuclease Inhibitor 436 698 IPR032675 -
Acco06g1881 1168 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Acco06g1881 1168 Gene3D Ribonuclease Inhibitor 32 193 IPR032675 -
Acco06g1881 1168 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 382 476 - -
Acco06g1881 1168 ProSiteProfiles Protein kinase domain profile. 874 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1881 1168 SMART serkin_6 874 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1881 1168 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 834 952 - -
Acco06g1881 1168 Gene3D Ribonuclease Inhibitor 699 797 IPR032675 -
Acco06g1881 1168 PANTHER UNNAMED PRODUCT 388 1086 - -
Acco06g1881 1168 PRINTS Leucine-rich repeat signature 729 742 - -
Acco06g1881 1168 PRINTS Leucine-rich repeat signature 750 763 - -
Acco06g1881 1168 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 622 800 - -
Acco06g1881 1168 Pfam Leucine rich repeat 657 715 IPR001611 GO:0005515
Acco06g1881 1168 Pfam Leucine rich repeat 557 616 IPR001611 GO:0005515
Acco06g1881 1168 Gene3D Transferase(Phosphotransferase) domain 1 953 1168 - -
Acco06g1881 1168 Gene3D Ribonuclease Inhibitor 270 375 IPR032675 -
Acco06g1881 1168 Gene3D Ribonuclease Inhibitor 376 435 IPR032675 -
Acco06g1881 1168 Gene3D Ribonuclease Inhibitor 196 269 IPR032675 -
Acco06g1881 1168 SMART LRR_typ_2 387 411 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 726 749 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 243 267 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 219 242 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 653 676 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 435 459 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 677 701 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 339 363 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 702 725 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 147 171 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 579 603 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 750 775 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 291 315 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 99 123 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 531 555 IPR003591 -
Acco06g1881 1168 SMART LRR_typ_2 507 530 IPR003591 -
Acco06g1881 1168 SUPERFAMILY RNI-like 87 401 - -
Acco06g1881 1168 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 187 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1881 Acco-ChrAcco06 13768990 13773204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1881 4 1166 Receptor kinase-like Gene Family AT5G46330 52.389 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Acco06g1881 Pkinase 8.7e-43 CL0016