Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1878 ATGGGTCGCCGGAAGATCAAGATGGAGATTGTGAAGGACGCAGCGTCGAGGCTGGTCACCTTCTCGAAGCGCCGGAATGGACTATTCAAGAAGGCGAACGAGCTCGCAATCCTGTGCGGCGCGGAACTCGCCATTGTGGTGTTCTCGCCAGGTGGCAAACCCTTCTCCTTCGGCCATCCCTCCGTCGATGCGGTAACTCAGAGGTTTCTCAGGCACCTCCAGGACGAGGACGAGGAGGCAAAATCGCCGGCACGTGGGACCTCTTCTTCTTCTGGTTCGAAGAAAGCTCGTCGGAAGGCGGAGAAATTGAACAAGCAGTTAATGAATCTGACGAAGGAACTGGAGGAAGAGAAGAAAAAGGGGGCGATTCTGGGCCAGGCGATCGAGGAGAAGAAGCAGGAGTATGGGCTTGGACCTGGGCCTGGTGATCTGAGGAAGCTTGAGGGATTGAAGCGATCGCTGGAGAAAGTGAGGGAAGGGGTGAAGCTGAGGAAGAGAGAAATGGAGGCAGCGTCGTCTTTGCTGGTACTTGCAGAGAAATTACAGGTGAAGGAAGACGATAACGATAATGTTGCCGAAAGTGACAATGGGGTGGCGAGTGATTCAGATGGCGGCGAGATCAGAAATGGAAACTGA 636 0.5425 MGRRKIKMEIVKDAASRLVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVDAVTQRFLRHLQDEDEEAKSPARGTSSSSGSKKARRKAEKLNKQLMNLTKELEEEKKKGAILGQAIEEKKQEYGLGPGPGDLRKLEGLKRSLEKVREGVKLRKREMEAASSLLVLAEKLQVKEDDNDNVAESDNGVASDSDGGEIRNGN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1878 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco06g1878 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco06g1878 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco06g1878 211 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Acco06g1878 211 MobiDBLite consensus disorder prediction 76 100 - -
Acco06g1878 211 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Acco06g1878 211 MobiDBLite consensus disorder prediction 180 211 - -
Acco06g1878 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco06g1878 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Acco06g1878 211 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Acco06g1878 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco06g1878 211 Coils Coil 93 120 - -
Acco06g1878 211 PANTHER MADS BOX PROTEIN 3 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1878 Acco-ChrAcco06 13751622 13752257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1878 1 180 Type I MADS-box Gene Family AT2G34440 43.646 6.19e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco06g1878 SRF-TF 5.2e-23 No_clan