Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1845 ATGTCCGACGAACCGATGCCCACTCGATGGTCCTTCCAGGAATTCAAATTGTCCTATGATGCCAAGTTTGGTAGGAAGAGAATCTTGGAGAATGGCGAGGCTACTGATAATCCCGTCAGTAATGGAAATGGCAATCTACATCCCAAAAGAACATCGGATACGGCTATCTATGAGCAGTTTCAGAGCCAGGGCCAGAACTCAGACCACTCAAATGGTTTTTCGCTAAACAATGTTGGTGATAGGCCACAGAAGTCTTTACTTCCTCCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATTATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAAACGGCCAAACGCTTACTGAAAGAGGCTGTTGTAATGCCAATCAAGTATCCTAAATACTTTACCGGTCTATTATCACCCTGGAAAGGTATTCTTCTCTTTGGACCACCAGGGACAGGAAAGACAATGCTTGCAAAGGCCGTTGCAACAGAGGGCAATACTACATTTTTCAATATTTCTGCATCCTCTGTTGTCAGCAAATGGAGAGGCGATTCAGAGAAGTTAGTTAGGGTACTATTTGAGCTTGCTAGGCACCATGCACCCTCAACAATATTTCTTGATGAGATTGATGCAATCATTAGTCAACGTGGTGAATCACGCAGCGAGCATGAAGCAAGTAGGCGGTTAAAAACTGAGCTACTTATACAGATGGATGGCTTGACACGGACTGATGAACTTGTTTTTGTTTTGGCGGCAACAAATATTCCTTGGGAACTGGACGCGGCCATGCTCCGACGTCTTGAGAAGCGAATCCTTGTGCCACTTCCTGAACCAGAAGCAAGAAAAGCTATGTTTGAGGAACTACTTCCACCACAGCCTGGTGAGGAGCAGATCCCCTATGATTTACTGGTGGAGCAGACAGACGGATACTCAGGTTCAGATATCCGGTTACTCTGCAAAGAGGGAGCAATGCAGCCATTGAGACGCTTAATGTCACAACTTGAACAGAGAGAAGAGGTGGTGCCGGAAGAAGAGTTGCCGAAAGTAGGGCCTATCGGACGTAAGGATATAGAGATTGCTTTGAGGAACACAAGGCCGTCTGCTCATCTCCATGCCCACAGATATGAGAAGTTCAATGCTGATTATGGAAGTCAAATAGTGCAATGA 1191 0.4559 MSDEPMPTRWSFQEFKLSYDAKFGRKRILENGEATDNPVSNGNGNLHPKRTSDTAIYEQFQSQGQNSDHSNGFSLNNVGDRPQKSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLETAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEGNTTFFNISASSVVSKWRGDSEKLVRVLFELARHHAPSTIFLDEIDAIISQRGESRSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNIPWELDAAMLRRLEKRILVPLPEPEARKAMFEELLPPQPGEEQIPYDLLVEQTDGYSGSDIRLLCKEGAMQPLRRLMSQLEQREEVVPEEELPKVGPIGRKDIEIALRNTRPSAHLHAHRYEKFNADYGSQIVQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1845 396 FunFam Katanin p60 ATPase-containing subunit A-like 2 111 295 - -
Acco06g1845 396 FunFam Katanin p60 ATPase-containing subunit A-like 2 284 372 - -
Acco06g1845 396 SMART AAA_5 148 285 IPR003593 GO:0016887
Acco06g1845 396 Pfam AAA+ lid domain 309 346 IPR041569 -
Acco06g1845 396 Gene3D - 284 372 - -
Acco06g1845 396 PANTHER AAA DOMAIN-CONTAINING 61 392 - -
Acco06g1845 396 MobiDBLite consensus disorder prediction 34 50 - -
Acco06g1845 396 MobiDBLite consensus disorder prediction 62 81 - -
Acco06g1845 396 Gene3D - 111 387 IPR027417 -
Acco06g1845 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 378 IPR027417 -
Acco06g1845 396 CDD RecA-like_VPS4-like 118 281 - -
Acco06g1845 396 MobiDBLite consensus disorder prediction 31 50 - -
Acco06g1845 396 MobiDBLite consensus disorder prediction 62 90 - -
Acco06g1845 396 Pfam ATPase family associated with various cellular activities (AAA) 152 282 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1845 Acco-ChrAcco06 13459631 13465250 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1845 146 355 Calmodulin-binding Proteins AT3G56690 36.574 1.70e-31 125