Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1813 ATGGAGTCTCCATTCTCCAGAACTCGTGTCTGGTTTCTAGGACATGACAATTGTATGGGGAAACTAAGAGAAGCTGTTCTTTGTTTTGCGGTACTACTTTGGTTATGGGGTTCTGCAAATGCTGTTCTTTCTCCTAAAGGAGTGAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTCTGCGGGATCCCCATGGTGTCTTAGATAATTGGGATGCGGATGCAGTTGATCCTTGTAGCTGGACTATGGTCACCTGTTCGCCGGACAACTTTGTCATTGGCCTGGGTACTCCCAGTCAAAGTCTATCAGGTACTCTGTCTCCAAGCATAGGCAACCTAACGAACCTTCAGATTGTTTTGCTACAGAATAATAATATAACAGGTCCAATACCTTCAGAGCTGGGCAGGCTTTCAAATCTTCATACACTTGATCTCTCTAATAACTTATTCAATGGGGAAATTCCTCCCTCTCTCGGTCACTTGAGAAGCCTCCAATACTTGAGGCTCAACAATAACAGTCTTTCTGGAGATTGTCCAGAGCCACTGGCTAACATGACACAGCTTGCTTTTCTTGACTTGTCCTATAACAACCTCAGTGGCCCTATGCCCAGAATTTTGGCCAAATCATTCAACATTGTCGGAAACTCTCTCGTCTGTGGTACGGGGAAAGAGACAAAATGTCATGGCATGACGACATTGATGCCCGTGTCCATGAACTTGAACACTACAGAGGATGCTATACCATCAGGCAAAACAAAATCACACAAAATGGCCATTGCCTTTGGCTTAAGTCTAGGATGCCTCTGCTTGATAGTTCTTGGTTTTGGGCTATTTCTATGGTGGAGGCACAAGCATAACCAACAGACATTTTTTGACGTCAAAGACCGGTGTCATGAAGAAGTGTACCTTGGAAACCTGAAGAGATTCCAATTCAGAGAACTCCAGATAGCTACACACAACTTCAGCAACAAGAACATTCTAGGAAAGGGTGGCTTTGGCAATGTGTACAAAGGAGTGCTCTCGGATGGAACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATAGGAGGAGAGATCCAGTTTCAGACTGAAGTTGAAATGATTAGCTTGGCAGTGCACCGCAACCTCCTCAGGCTCTACGGATTCTGCATGACACCAACCGAAAGGCTTCTGGTTTACCCTTACATGGCTAATGGAAGTGTTGCTTCCCGTCTCAAGGCTAAACCAGTGTTAGACTGGGGCACTAGGAAGCAAATTGCCTTAGGGGCAGCAAGGGGACTATTATACCTTCATGAGCAGTGTGATCCAAAGATAATTCACAGGGATGTGAAAGCTGCAAACATATTGCTTGATGACTATTGTGAGGCTGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTTACAACTGCAGTGAGAGGCACTGTAGGGCATATTGCCCCAGAGTATCTCTCCACAGGGCAATCCTCTGAGAAAACTGATGTCTTCGGATTTGGCATTCTCCTCCTTGAACTGATCACAGGCCAGAGGGCTCTAGAATTTGGAAAGGCTGCAAACCAGAAAGGAGCCATGCTAGATTGGGTGAAGAAAATTCATCAGGAGAAGAAATTAGAGCTGTTCGTGGACAAGGATCTGAAGAACAACTATGACAGGATTGAGCTGGAAGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATACCTTCCTAGTCTGAGGCCAAAAATGTCAGAAGTAGTAAGGATGCTTGAAGGAGATGGATTGGCAGAAAGATGGGAAGCTTCTCAGAGAGCTGATATGAGCAAGAGCAAGGCTCCTGAGTTGTCTTCTTCTGATCGATATTCTGATCTCACTGATGACTCTTCCTTGCAAGTCCAGGCCATGGAACTTTCAGGCCCGAGGTGA 1929 0.452 MESPFSRTRVWFLGHDNCMGKLREAVLCFAVLLWLWGSANAVLSPKGVNFEVQALMGIKASLRDPHGVLDNWDADAVDPCSWTMVTCSPDNFVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGPIPSELGRLSNLHTLDLSNNLFNGEIPPSLGHLRSLQYLRLNNNSLSGDCPEPLANMTQLAFLDLSYNNLSGPMPRILAKSFNIVGNSLVCGTGKETKCHGMTTLMPVSMNLNTTEDAIPSGKTKSHKMAIAFGLSLGCLCLIVLGFGLFLWWRHKHNQQTFFDVKDRCHEEVYLGNLKRFQFRELQIATHNFSNKNILGKGGFGNVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMANGSVASRLKAKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELFVDKDLKNNYDRIELEEMVQVALLCTQYLPSLRPKMSEVVRMLEGDGLAERWEASQRADMSKSKAPELSSSDRYSDLTDDSSLQVQAMELSGPR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1813 642 MobiDBLite consensus disorder prediction 602 642 - -
Acco06g1813 642 MobiDBLite consensus disorder prediction 610 636 - -
Acco06g1813 642 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Acco06g1813 642 SUPERFAMILY Protein kinase-like (PK-like) 301 592 IPR011009 -
Acco06g1813 642 Gene3D Transferase(Phosphotransferase) domain 1 399 611 - -
Acco06g1813 642 SUPERFAMILY L domain-like 51 213 - -
Acco06g1813 642 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 29 602 - -
Acco06g1813 642 FunFam Somatic embryogenesis receptor-like kinase 1 399 611 - -
Acco06g1813 642 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Acco06g1813 642 Gene3D Ribonuclease Inhibitor 48 230 IPR032675 -
Acco06g1813 642 ProSiteProfiles Protein kinase domain profile. 322 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1813 642 FunFam Somatic embryogenesis receptor kinase 1 291 398 - -
Acco06g1813 642 Pfam Protein kinase domain 323 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1813 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Acco06g1813 642 FunFam Putative LRR receptor-like serine/threonine-protein kinase 48 230 - -
Acco06g1813 642 SMART serkin_6 322 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1813 642 Gene3D Phosphorylase Kinase; domain 1 291 398 - -
Acco06g1813 642 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1813 Acco-ChrAcco06 13108148 13111102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1813 19 642 Receptor kinase-like Gene Family AT5G16000 78.041 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco06g1813 Pkinase 1e-44 CL0016