Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1812 ATGCTCAAAGAAGGTAACGGCAATGGCGTCGCCAGTAATAACAGCTGGCCACGTATCTGTGACACGTGCCGCTCTGCTCCCTGCACTGTTTACTGCCGCGCTGACATGGCTTACCTCTGCACCGGCTGCGACGCCCGCATCCATGCCGCCAACCGCGTTGCATCCCGCCACGAGCGCGTCTGGGTTTGTGAGTCCTGTGAGCGCGCCCCCGCCGCGTTTCTCTGCAAGGCCGACGCCGCCTCCCTCTGCTCGGCCTGCGACGCTGACATCCACTCCGCCAATCCCCTCGCCAGCCGTCACCACCGCGTCCCCATTCTCCCCTTCTACGGGCCTCCTTCCGCCGCGGGCTCTGCTCCTGACGGGGATGATGGTTTTCTAGCTCATGCTGGCGATGATGCGGAGGAGGAGGAGGAGGAGGAGGTTGTCGATGAAGACGAAGCCGCCTCGTGGTTGTTGCTGAATCCTGTGAAGAACAACAACCACAGCAACAACAATAATCAAAGCAACGGTTTTTTGTTTGGTTCTGGGGAGGCTGATGATTATTTGGACCTCATGGATTGCAATTCATGTGCTGAAAATCCATTGACCGATCATTACAATCAGCAGCAACATTATGATGTTCCTCAGAAAAACTATGCCGGCGACAGTGTCGTTCCGGTTCAGCAGCAGCATTTTCAGTTGGGTTTGGAGTTTGATTCGTCAAAATCTGGCTACAGTGCTTTCAACGGTTCTGTTACTCACAACAACGTTTCGATTCCGTCAATAGATGTTGGGATTGTACCGGAATCAACAGTCAGCGATGGCTCGATTTCCCATTCAAGACCTCCAAAAGGGACCATTGACCTATTTTCTGGGCCTCCAATTCAGATACCTTTGCAGCTTAGTCCGATGGACAGAGAGGCCAGAGTTTTAAGATACAGAGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACAATAAGGTATGCCTCTAGGAAGGCATATGCAGAGACAAGACCTCGTATCAAAGGTCGATTCGCAAAGAGAACAGAGGTGGAAGCTGAAGTGGACCAGATGTTCTCTACTTCTTTAATGACCAAAACTGGATATGGCATTGTTCCTTCTTTCTGA 1107 0.5176 MLKEGNGNGVASNNSWPRICDTCRSAPCTVYCRADMAYLCTGCDARIHAANRVASRHERVWVCESCERAPAAFLCKADAASLCSACDADIHSANPLASRHHRVPILPFYGPPSAAGSAPDGDDGFLAHAGDDAEEEEEEEVVDEDEAASWLLLNPVKNNNHSNNNNQSNGFLFGSGEADDYLDLMDCNSCAENPLTDHYNQQQHYDVPQKNYAGDSVVPVQQQHFQLGLEFDSSKSGYSAFNGSVTHNNVSIPSIDVGIVPESTVSDGSISHSRPPKGTIDLFSGPPIQIPLQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTKTGYGIVPSF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1812 368 SMART bboxneu5 15 62 IPR000315 GO:0008270
Acco06g1812 368 SMART bboxneu5 63 105 IPR000315 GO:0008270
Acco06g1812 368 MobiDBLite consensus disorder prediction 111 137 - -
Acco06g1812 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 356 IPR045281 GO:0009909
Acco06g1812 368 CDD Bbox1_BBX-like 19 62 - -
Acco06g1812 368 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Acco06g1812 368 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Acco06g1812 368 Pfam CCT motif 299 341 IPR010402 GO:0005515
Acco06g1812 368 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Acco06g1812 368 ProSiteProfiles CCT domain profile. 299 341 IPR010402 GO:0005515
Acco06g1812 368 CDD Bbox1_BBX-like 62 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1812 Acco-ChrAcco06 13094618 13096295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1812 1 368 C2C2-CO-like Transcription Factor Family AT3G02380 58.377 2.34e-137 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Acco06g1812 zf-B_box 5.2e-07 No_clan