Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1803 ATGGCTAATAACTCTCAACTTCCGTCCCTCTTTTCCCTTGGAGATGAATTTGAAGAATCAGGCCCCGATGAACAAGTATCTGATCTCCCATCACCCACTGCTCACGATCATTGTTGCACCGACTCCTCCAACCCCTTTGCTACCGTGTCCTTCGACCATTTGAGCAACCACTCAAACTGGTATTCTGATTCGGACTCCGATTCGGTGAGTTGCTTTGTTACAGATCTTTTTGAAAATCGCTCGTCGGAGAAATTTTATCGTCTCTGTAACGATAGTTCTGATATCAATCCGTTTTCGACCGTTCCTGGCGATGGTCGCGATGGAGAAGGGTCAAGTTATGCGGAGACGAAATTAGGGTCTGGATTTGGAACGGGAAAAAATGTTGAGACTTCTGCAGTAGGCCAGACATCGAGCTCTGAAAGGGTTCGTTCACACACGGATGGTCTTCGAATTGTCGGGTTTAGTTCTGAGTCGGATTCAAATACTGATGAAGAGCTTGATAGGGCTATAGAATTCAGTTCGGGTGAAAATGATGGCAATAGAGTCAGTGGCTTTGACGATTCTGATGTCCATTTTTGTTGGGACAGCCTTTGCTTGGATGATCAAAGGACACCCAATGAACATTTTGAGTGGGAGGATTTAGAGGAAAGAGTCAATGATGGAGAAGACTTGAGCGTGGTGATTGGTGAGGTTGATGATCAATCTGTAGCATCTGGATTTTCATATGGAGAAGAGTCGGGTGAAGAGGCATTGAGATACCTTGAATGGGAAATTCTGTTGGCGGTCAACAATTTAGAGAGGAATTCGAGCTTGGACCATGGTACCACTGCAGGTTCCTTCCTAACGGTTCAGGATGATGGTTATATGAATACAGCTGAGTATGATATATTTTTTGGGCAATTCATGGAAAATGAGAGTTCCTTAAAGGGTAGTCCTCCTACAGCAAAAAGTGTTATGGAGAATCTTCCTTTAGTAGAATTGACAGAGGAGGACTTGGTGGGGGAGAATGTAGCTTGTGCTGTTTGCAAAGACGAAATCATATGGAAGGAAAAAGTGAGAAGGCTTCCCTGCTCACACTTTTACCATGGGGACTGCATTATGCCATGGTTGAGCATTCGTAATACATGCCCTGTTTGTCGGTTTGAATTGCCCACAGATGATCCTGATTATGAGCAGAGGAAGAGTCAGAGAACTGCTCATGAACCTGCTCATGATCTTTTTGAGTTTGCACTGTAG 1236 0.4442 MANNSQLPSLFSLGDEFEESGPDEQVSDLPSPTAHDHCCTDSSNPFATVSFDHLSNHSNWYSDSDSDSVSCFVTDLFENRSSEKFYRLCNDSSDINPFSTVPGDGRDGEGSSYAETKLGSGFGTGKNVETSAVGQTSSSERVRSHTDGLRIVGFSSESDSNTDEELDRAIEFSSGENDGNRVSGFDDSDVHFCWDSLCLDDQRTPNEHFEWEDLEERVNDGEDLSVVIGEVDDQSVASGFSYGEESGEEALRYLEWEILLAVNNLERNSSLDHGTTAGSFLTVQDDGYMNTAEYDIFFGQFMENESSLKGSPPTAKSVMENLPLVELTEEDLVGENVACAVCKDEIIWKEKVRRLPCSHFYHGDCIMPWLSIRNTCPVCRFELPTDDPDYEQRKSQRTAHEPAHDLFEFAL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1803 411 MobiDBLite consensus disorder prediction 1 37 - -
Acco06g1803 411 Pfam Ring finger domain 339 380 IPR001841 -
Acco06g1803 411 SUPERFAMILY RING/U-box 319 387 - -
Acco06g1803 411 MobiDBLite consensus disorder prediction 119 142 - -
Acco06g1803 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 200 384 - -
Acco06g1803 411 MobiDBLite consensus disorder prediction 123 142 - -
Acco06g1803 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 386 IPR013083 -
Acco06g1803 411 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Acco06g1803 411 SMART ring_2 339 379 IPR001841 -
Acco06g1803 411 FunFam E3 ubiquitin-protein ligase RING1-like 300 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1803 Acco-ChrAcco06 13027783 13029018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1803 148 395 C3H Transcription Factor Family AT3G02340 38.722 2.64e-44 157