LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g1794	ATGATCGTGGTTCATGCAAAAATGGACGTCTCTAACACCAGTCTTCTGCAAGATGATTTCATTGTTTACGTCAAGAGAGGTCAAACAATGGTTCGCCAAGCTACTTTGATTATCATTGGTGTCACAGTTGGCGTGGTCCTGGGAATTTTTATTGCTGCCCTTATATTTTTTGGCATAAGGTGGTATAAGAAGCATGCCCGTCTTACATTATCTGCGAAAGAGAGTAGTTTAACTACTCTTCCTATACGCACAAATGGGTTAGGAGCAAGTACCGACTTTAGTGCCTCACTTACAAGTTCCATATCCAATTCAATGTCAGAAAATTTGCCAAGAAACTCCAATTTCGCTTGGCGGAGTCATCAGAACAAAGATCGATTTTCTCCGACATCCGGCATTTCGAAGTACTCATACAAAGAAATTCAAAAGGCCACGCAGAATTTCACAACTATTTTGGGGCAAGGATCATTTGGCACAGTTTATAAAGCCACAATGCCGACAGGAGAGGTGGTAGCTGTGAAGGTGCTTGATTCTAATTCTAAACAAGGGGAGAAAGAGTTTCAAACAGAGGTGCTTTTGCTGGGAAGATTGCATCATCGGAATCTTGTGAATTTAGTAGGATATTGTGTAGATAAAGGACACCGTATTCTGATTTATGAGTTCATGAGCAATGGAAGTTTGTCAAACCTTCTATACGGTGAAGTAAAGGCCTTGAGTTGGAATGAAAGGCTTCAAATTGTTATTGATATTTCACATGGAATTGAATATCTTCATGAAGGAGCAGTCCCACCCGTTATACATCGTGATTTGAAGTCTGCCAATATATTGTTAGATCATTCAATGAGAGCTAAGGTTGCTGATTTTGGGTTGTCAAAGGAAGAGGTCTTTGATGGCCGCAATTCAGGCCTTAAAGGAACATACGGCTACATGGACCCATCATACATTTCCACAAACACGTTCACAATGAAGAGTGACATCTACAGTTTTGGTATAATCATTTTTGAGCTCATTACAGCAATTCACCCACATCAAAATTTGATGGAATATATAAACCTTGCTGCTATGGATCATGATGGCGTTGATGAGATACTTGACAAACAACTTGTAGGAAAATGCAACCTTGAAGAAGTAAGGCAGCTTGCTAAAATTGCATACAAATGTTTGCACAGATCTCCTAGGAAACGCCCCTCTATTGGTGAGGTTTCACAGGGCATATTGAGAATAAAACAAAGGCGCCTTATAAGAGAAGATACCTTGCCATTTGCGGGCAATAACTTATCCAGAGCGTTGAGTCGAGTAGAGGATCAACAAATTGAAATGAACAAGTTAACCAGCAAGAAGTACAGAGGAACTGGATGA	1356	0.4019	MIVVHAKMDVSNTSLLQDDFIVYVKRGQTMVRQATLIIIGVTVGVVLGIFIAALIFFGIRWYKKHARLTLSAKESSLTTLPIRTNGLGASTDFSASLTSSISNSMSENLPRNSNFAWRSHQNKDRFSPTSGISKYSYKEIQKATQNFTTILGQGSFGTVYKATMPTGEVVAVKVLDSNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCVDKGHRILIYEFMSNGSLSNLLYGEVKALSWNERLQIVIDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEVFDGRNSGLKGTYGYMDPSYISTNTFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDHDGVDEILDKQLVGKCNLEEVRQLAKIAYKCLHRSPRKRPSIGEVSQGILRIKQRRLIREDTLPFAGNNLSRALSRVEDQQIEMNKLTSKKYRGTG	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g1794	451	SMART	serkin_6	145	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1794	451	SUPERFAMILY	Protein kinase-like (PK-like)	117	401	IPR011009	-
	Acco06g1794	451	ProSiteProfiles	Protein kinase domain profile.	145	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1794	451	Coils	Coil	425	445	-	-
	Acco06g1794	451	Pfam	Protein tyrosine and serine/threonine kinase	147	401	IPR001245	GO:0004672\|GO:0006468
	Acco06g1794	451	Gene3D	Transferase(Phosphotransferase) domain 1	221	418	-	-
	Acco06g1794	451	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	32	411	-	-
	Acco06g1794	451	FunFam	Calcium/calmodulin-regulated receptor-like kinase 1	118	220	-	-
	Acco06g1794	451	Gene3D	Phosphorylase Kinase; domain 1	110	220	-	-
	Acco06g1794	451	CDD	STKc_IRAK	151	407	-	-
	Acco06g1794	451	ProSitePatterns	Protein kinases ATP-binding region signature.	151	173	IPR017441	GO:0005524
	Acco06g1794	451	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	264	276	IPR008271	GO:0004672\|GO:0006468
	Acco06g1794	451	FunFam	Calcium/calmodulin-regulated receptor-like kinase 2	221	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g1794	Acco-ChrAcco06	12930913	12935248	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g1794	131	400	Receptor kinase-like Gene Family	AT3G19300	41.935	3.09e-70	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-2	Acco06g1794		PK_Tyr_Ser-Thr	4.5e-50	CL0016