Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco06g1787 | ATGGGTTCTGTTTGTTGTTGTATGAGTGCTGATGAATTAGAGGAGTATGTAAATCGAAATAGTTCTGTATATAGGAATTGTGTGTGTCTCAATTGCTTCTTACAGAACTTTCGGAATGTGTATACAGCAATATTCCATAGAGGGGAAGTGCACTCGCTTCCTTCATCTATACAGGGGGCAGCTTCTATGACTTCTACAGCATCACTTGATAATTCGCTATCTGACATGTACCATTCTCCCCCAAGACCACTGCCTTATGATGTAGACCCCAGGCATTTCCGGTTTTCAAGACATGACAAAGGTTCTAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGGGGATCAAGAATCTTTAAGTTCAGGAGGCAAATGGAATGAATCTCCCTGTGAAGATGCATCAAAGGAATACAAATCTAAGTCCTCGGTGAGGCTCTCATCAGCAAAATATGCAACTGGAGCTGAGCTTGTTTATGCATCAGAGGAGGAGGAGGACGTATGCCCAACCTGTCTTGAAGAATACACTGAAGAGAACCCAAGGATATTGACAAATTGCAGTCATCATTTTCATCTTAGTTGCATTTACGAATGGATGGAGAGAAGTGAAAAATGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACTTAA | 663 | 0.4133 | MGSVCCCMSADELEEYVNRNSSVYRNCVCLNCFLQNFRNVYTAIFHRGEVHSLPSSIQGAASMTSTASLDNSLSDMYHSPPRPLPYDVDPRHFRFSRHDKGSSHLNEESEPLRGDVDGDQESLSSGGKWNESPCEDASKEYKSKSSVRLSSAKYATGAELVYASEEEEDVCPTCLEEYTEENPRILTNCSHHFHLSCIYEWMERSEKCPVCGKVMVFDET | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco06g1787 | 220 | CDD | RING-H2_AIRP1-like | 167 | 215 | - | - | |
| Acco06g1787 | 220 | MobiDBLite | consensus disorder prediction | 97 | 117 | - | - | |
| Acco06g1787 | 220 | SUPERFAMILY | RING/U-box | 165 | 217 | - | - | |
| Acco06g1787 | 220 | SMART | ring_2 | 171 | 211 | IPR001841 | - | |
| Acco06g1787 | 220 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 60 | 219 | - | - | |
| Acco06g1787 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 217 | IPR013083 | - | |
| Acco06g1787 | 220 | ProSiteProfiles | Zinc finger RING-type profile. | 171 | 211 | IPR001841 | - | |
| Acco06g1787 | 220 | MobiDBLite | consensus disorder prediction | 97 | 136 | - | - | |
| Acco06g1787 | 220 | MobiDBLite | consensus disorder prediction | 72 | 91 | - | - | |
| Acco06g1787 | 220 | Pfam | RING-H2 zinc finger domain | 165 | 211 | IPR024766 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco06g1787 | Acco-ChrAcco06 | 12889764 | 12893035 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco06g1787 | 1 | 219 | C3H Transcription Factor Family | AT5G38895 | 59.545 | 1.66e-97 | 285 |