Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1785 ATGGGGAGAGGTAGGGTTCAGTTGAAGAAGATCGAGAACAGTTCGAGCAGGCACGTCACGTTCTCAAAGCGCAGGAACGGGCTCATTAAGAAAGCCAATGAAATCTCTGTTCTCTGTGATGCTCAGGTCGCTTTGATTGTCTTCAATTGCAGGGGCAAACTCACTGAGTTCAACTCTCACTCCTCCAGCATGGATAGCATTCTGGAGCGATATGAGAGATGTTCGCACTCAGAACAACTTGCTGGAACTAACAACGATTCCCAGGGAAACTTGTCTTTGGAGTTATTCAAGCTCAAAACCAGAGCGGAAGTTTTACAGAAGAACATAAGGAATTATGAAGGAGAGGATCTGGATCCCTTGAGTTTGAAGGAGCTTCATAGTCTGGAGCACCAGCTTGACACTGCTATAAAGCGCATCCGTACAAAAAAGAACCAAATCATGATAGAAACCGTCTCTGAGGGTCAAAAGAAGGAAAAGGCAATGAAGGATGAGAACAACATGCTAGCAAAGAAGTTGAAGGAGAAGGAGAAGTCACTGATAAATGGAGTGGGTCCCCGAAGGAGGCAGGAAACCCTAACCCAATATCCCTTCAACTTCAACGTTTCTCCACCGCAGCTGCTGCCACCACCTACTCTAACTCTCGGGGGGACTTGTGGAGAAGGAGGAGGCATGGAGGTGGAGGATTATGAAGAAGCTGAAGCTGGTCCCAGTAACACCGTCATGCCACCCTGGATGATGTTTCATATGACTACTTAA 756 0.4696 MGRGRVQLKKIENSSSRHVTFSKRRNGLIKKANEISVLCDAQVALIVFNCRGKLTEFNSHSSSMDSILERYERCSHSEQLAGTNNDSQGNLSLELFKLKTRAEVLQKNIRNYEGEDLDPLSLKELHSLEHQLDTAIKRIRTKKNQIMIETVSEGQKKEKAMKDENNMLAKKLKEKEKSLINGVGPRRRQETLTQYPFNFNVSPPQLLPPPTLTLGGTCGEGGGMEVEDYEEAEAGPSNTVMPPWMMFHMTT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1785 251 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Acco06g1785 251 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco06g1785 251 Coils Coil 125 145 - -
Acco06g1785 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco06g1785 251 Coils Coil 158 178 - -
Acco06g1785 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco06g1785 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco06g1785 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco06g1785 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Acco06g1785 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco06g1785 251 Coils Coil 95 115 - -
Acco06g1785 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco06g1785 251 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco06g1785 251 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Acco06g1785 251 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Acco06g1785 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco06g1785 251 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1785 Acco-ChrAcco06 12877028 12881938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1785 1 179 MADS-box Gene Family AT1G26310 54.945 7.64e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco06g1785 K-box 1.1e-24 No_clan