Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1722 ATGGCAAGGAAGAGGAAGGCCATGGAAATAGAGGAAGACAGAAACATGAAATGGGATGAGATGATGAAGGAAGCTGAAGCACTGGGAGTGAGCAGAAGAGCCAGGAAGCGTTTTGTTGGGGTAAGACAAAGGCCTTCTGGAAGATGGGTAGCAGAGATTAAGGATACTATTCAGAAGATCAGGGTTTGGTTGGGAACTTTCGATACTGCAGAGGAAGCTGCTCGAGCTTATGATGAGGCTGCTTGTCTCCTTCGTGGTGCCAACACAAGGACCAATTTCTGGCCTTGTTCTTATTCTTCTTCTTCAAAAACCCCTGCTCTTTCCTCTAAAATCACTAATCTCCTCCTCCAGAGGCTCAAAGCAAGGAACAACACTTGCTCTGTTTCTTCTTCTTCTTCTGATAATTGTTCTTCCTCCTCCTCTGTTTTTCCTCTCTCTGATCATCAGCAAGTTGATTTGCACAATGAAGAAGCAGCTGCTGATTTTTCTATTGACCAGTTGACTGATTTCCTTAATGATCCTGAAGATTACAGCGCAGGAAACAACAATGACTTTAATATGTTCACTGATCATAGTGTGCAAGTTGAGTCCTTTACCAGTAGTCTTGAATCATGTTTGACTGAAACAGAACAATGCAGGGTAAGAGAAATGGGGTCAGAAAATGACGTCAGGAATGTTGTTGCAGACTGCAGTTCAGAAGGGGAAAGAGAGGAAGAAAGTGAAGAAGAGGAACAAGAAAGTACGCATGTGGGTGCGGAGGATTTTGAGTTTGTGGACAAGGTTGCTCCTTCATGTTACTATTCACCGTTTGAGATGGCGGAAGAGATGGAGGAGCCAGCGATGGTTGAGGCAGAGAACTACGGCGGCGATGAGCCTTCGATGCTCAGAGCAGCCATGAAGAGGATGAAGTATGAGAGAAAGTTCTCAGCTTCTCTTTATGCATTTAATGGAATACCTGAATGCTTGAAGCTGAAGTTAGGAGGAGAAGGATCTGGAAACTCCAAGGTAATAGGGGTTTCTGATCATTTAGCTAACCTTAAGGATTCATGTAGCAGCAAGGAGAAATTCGAGGAAAATAAGGATCACAAAGAAGAACAAAACACAGTGACATTAAATGAGGCTGAGAGTTCTTCATCTTCTACTACCACCAGTGTTGATGGTGAATTGTTGCTTTGGAATTCTCTGGATCTTCCTCCCATATGTTACGTTAACTAA 1215 0.4337 MARKRKAMEIEEDRNMKWDEMMKEAEALGVSRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSYSSSSKTPALSSKITNLLLQRLKARNNTCSVSSSSSDNCSSSSSVFPLSDHQQVDLHNEEAAADFSIDQLTDFLNDPEDYSAGNNNDFNMFTDHSVQVESFTSSLESCLTETEQCRVREMGSENDVRNVVADCSSEGEREEESEEEEQESTHVGAEDFEFVDKVAPSCYYSPFEMAEEMEEPAMVEAENYGGDEPSMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLGGEGSGNSKVIGVSDHLANLKDSCSSKEKFEENKDHKEEQNTVTLNEAESSSSSTTTSVDGELLLWNSLDLPPICYVN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1722 404 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Acco06g1722 404 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Acco06g1722 404 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Acco06g1722 404 MobiDBLite consensus disorder prediction 229 250 - -
Acco06g1722 404 Coils Coil 8 28 - -
Acco06g1722 404 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Acco06g1722 404 MobiDBLite consensus disorder prediction 354 369 - -
Acco06g1722 404 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Acco06g1722 404 MobiDBLite consensus disorder prediction 370 385 - -
Acco06g1722 404 MobiDBLite consensus disorder prediction 234 249 - -
Acco06g1722 404 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 309 - -
Acco06g1722 404 Coils Coil 353 373 - -
Acco06g1722 404 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Acco06g1722 404 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Acco06g1722 404 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Acco06g1722 404 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Acco06g1722 404 MobiDBLite consensus disorder prediction 354 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1722 Acco-ChrAcco06 12339953 12341167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1722 31 115 AP2-EREBP Transcription Factor Family AT5G19790 70.588 1.72e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco06g1722 AP2 1.2e-14 CL0081