LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g1693	ATGGCTGAAAAGTGTACAATTAACCACACGGCGACGACCCACTCACTTTCCCGACCCAACGTGTCGGATCTCTATCTACAAAGTTTGCAGCTTTCTCTTTCTGTAGCAAGAAAGAAAAAAACATTGAAAAAAGAGAGAGAAAAGATAGAGAAGTTGAAGACAGGAATGTTGGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGCAAGACGATCCCGCTGCCGGAGATACCGGTCGCATACGGAGGCTCTTCCGGCGCTCCGTCTTCTTCTTCTGGGGATAGTGGTGACGATGGTATTGATCACAATCGTGCTTCTCCCACCAACTTATCGCGAGAGTCGAACACGAAGAGGGATGAGGAAGAACAAGAAACTGATGAGAAGGACACTTTGGGACAGAATCCAAATGAGAATACGGAGGATGGAGCCCCCACTCTATCTACAGAAGAGGTCACTAATCTGGATGCAGCCTCAAGAACAAGTGAAGAATCTGATACGCCCCATGCTGAGAAGGACGCTACTACATTGAAGGCTTCAAAATCTGAAGAAGGGCAGAGTGAGATGAGTAATTCGCAAGAGAAGACTTTGAAAAAGCCAGACAAAATACTGCCCTGCCCCCGCTGCAATAGCATGGACACTAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCACGCCACTTCTGCAAGAACTGCCAGAGATACTGGACCGCTGGTGGAACCATGAGGAACGTGCCTGTGGGTGCTGGTCGTCGAAAGAACAAGAATTCTTCTCACTATCGCCAAATAACTGTCGCTGAAGCACTCCAGGCTGCTCAAACAGACATGCCAAATGGAGTACATCATCCTGCCTTGAAGAAGCCCAACAGCACAGTCCTTGCTTTTGGGTCTGATGCACCTTTGTGTGAGTCAATGGCATCTGTTTTGAACCTTGCTGATAAAACAATGCAGGACTGTATGAGAAACGGGTTTAATAGACCTGAAGAACTAAGAATTCAGAAAGGAGATGATCATTCTAATAAATCCTCTGTGGTGTCAACAAAGCCGATGGATGATGCAAGCATCAACAAGCAACAAGAACAAGCAATGCAGAACTGCCAGGGTTTCCCTCCTCAAGTTCCTTATTATCCTGGGGCACCTTGGCCTTTCACTTGGAATCCGGTGCAGTGGAGCTCTCCTTTACCACCACCGCCTGCATTTTGCCCTCCAGGATTCACCATGCCATTCTATCCTGCAGCTGCGTATTGGGGTTGTACTGTCTCAGGTGCTTGGAACATACCATGGCTACCTCATTCGTCATCACCAAACAGCATGAGCCCTAATTCTGGCCCTAACTCGCCCACCCTGGGTAAACATTCAAGAGAAGGAAACATGCTCAAGATAAATGACTCAGGTGGAGAGGATGAACGTGGTGGTAAAGAAAATGGCAAAGAGAAGTGTCTTTGGGTTCCTAAAACTTTGAGGATTGATGACCCAGACGAAGCGGCTAAAAGCTCTATATGGACAACGCTGGGGATTAAAAATGATAAGGCTGAGTCAGCTCCAGAGGGAGGACTCTTTAGGGCGTTCCCATCAAAGGGTGATGGAAAAAATCACTCAGCACAAAACCCAACAGTCTTGCAGGCCAATCCAGCGGCGTTGTCTAGGTCACTCAATTTTCATGAGACCTCATAA	1674	0.4725	MAEKCTINHTATTHSLSRPNVSDLYLQSLQLSLSVARKKKTLKKEREKIEKLKTGMLEAKDPAIKLFGKTIPLPEIPVAYGGSSGAPSSSSGDSGDDGIDHNRASPTNLSRESNTKRDEEEQETDEKDTLGQNPNENTEDGAPTLSTEEVTNLDAASRTSEESDTPHAEKDATTLKASKSEEGQSEMSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSHYRQITVAEALQAAQTDMPNGVHHPALKKPNSTVLAFGSDAPLCESMASVLNLADKTMQDCMRNGFNRPEELRIQKGDDHSNKSSVVSTKPMDDASINKQQEQAMQNCQGFPPQVPYYPGAPWPFTWNPVQWSSPLPPPPAFCPPGFTMPFYPAAAYWGCTVSGAWNIPWLPHSSSPNSMSPNSGPNSPTLGKHSREGNMLKINDSGGEDERGGKENGKEKCLWVPKTLRIDDPDEAAKSSIWTTLGIKNDKAESAPEGGLFRAFPSKGDGKNHSAQNPTVLQANPAALSRSLNFHETS	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g1693	557	ProSitePatterns	Zinc finger Dof-type signature.	204	240	IPR003851	GO:0003677\|GO:0006355
	Acco06g1693	557	PANTHER	CYCLIC DOF FACTOR 2	59	557	IPR045174	GO:0003700\|GO:0006355
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	434	452	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	507	557	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	434	477	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	456	477	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	529	557	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	134	159	-	-
	Acco06g1693	557	Pfam	Dof domain, zinc finger	199	256	IPR003851	GO:0003677\|GO:0006355
	Acco06g1693	557	Coils	Coil	35	55	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	160	177	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	112	133	-	-
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	74	202	-	-
	Acco06g1693	557	ProSiteProfiles	Zinc finger Dof-type profile.	202	256	IPR003851	GO:0003677\|GO:0006355
	Acco06g1693	557	MobiDBLite	consensus disorder prediction	83	111	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g1693	Acco-ChrAcco06	12112135	12115673	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g1693	61	557	C2C2-Dof Transcription Factor Family	AT5G39660	45.143	6.42e-114	344

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Acco06g1693		zf-Dof	3.6e-32	No_clan