Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1677 ATGGGAAGGCCGCCTTGCTGTGACAAAGAAGGTGTCAAGAAAGGACCTTGGACACCTGAAGAAGATATCTTGCTGGTGTCATACATACAGCAACATGGCCCAGGGAATTGGAAGGCTGTTCCCACCAATACAGGGTTGTCTCGGTGCAGCAAGAGTTGCCGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAGCGTGGCAACTTCACTGACCAAGAAGAGAAGATGATCATCCATCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCGATAGCTTCGTACCTACCACAGAGAACAGATAACGACATAAAAAATTATTGGAACACCCACTTGAAGAAGAAGCTCAAGAAAATGCAGACGGGTCTGGAAGGAGATAGCATGAGAGGTGGGTTTTCGGGTTCGAATAGTACAATGCCTCGAGGCCAGTGGGAAAGAAGGCTTCAAACTGATATCCAAATGGCTAAGAGAGCTCTTCGAGATGCACTGTCACCTCATAAGCCTTCTGGTGTTTCATTTCAATCCAACACCTCTAATAATAATAATGATGATACAGGCTCCTTCTCTTCCACTTCTTTAGCGAAACCAACCCAATCCTTATGCTATGCGTCTACTGCTGACAACATAGCTCGTTTGCTCAAAGAATGGAAGAAGAATCCACCAAAGAAAAGTCCTTCCCGCACTTCTAACTCCACAATGACTCAGAACTCACTCGGAAACTTGGCTGCTTGTAGCAATGAAGCCCCAGACAAAGGAAGCAGCTTTGATACATGCGAGACGTTTGAGTCATTGTTTGGGTTGGAATCTTTGGATTCTTCGAATTCGGAGTTTTCCCAATCTCGGTCTCCTGACCCTGAGCTTATAAGTACTACTCTTTTCCAAGATGAGAGCAAACCGGAGAATGGTGCAGAATTGCCGTTTTCTTTTCTTGAAAAATGGCTTTTTGATGAAGTTCCTTTGCCAGGAATAAGTTAG 975 0.4492 MGRPPCCDKEGVKKGPWTPEEDILLVSYIQQHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQTGLEGDSMRGGFSGSNSTMPRGQWERRLQTDIQMAKRALRDALSPHKPSGVSFQSNTSNNNNDDTGSFSSTSLAKPTQSLCYASTADNIARLLKEWKKNPPKKSPSRTSNSTMTQNSLGNLAACSNEAPDKGSSFDTCETFESLFGLESLDSSNSEFSQSRSPDPELISTTLFQDESKPENGAELPFSFLEKWLFDEVPLPGIS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1677 324 CDD SANT 69 112 IPR001005 -
Acco06g1677 324 FunFam MYB-related transcription factor 13 66 - -
Acco06g1677 324 MobiDBLite consensus disorder prediction 163 192 - -
Acco06g1677 324 FunFam Transcription factor MYB30 68 126 - -
Acco06g1677 324 CDD SANT 16 61 IPR001005 -
Acco06g1677 324 MobiDBLite consensus disorder prediction 216 236 - -
Acco06g1677 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Acco06g1677 324 Gene3D - 68 128 - -
Acco06g1677 324 MobiDBLite consensus disorder prediction 123 143 - -
Acco06g1677 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Acco06g1677 324 Gene3D - 13 66 - -
Acco06g1677 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Acco06g1677 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco06g1677 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco06g1677 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco06g1677 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco06g1677 324 SMART sant 13 63 IPR001005 -
Acco06g1677 324 SMART sant 66 114 IPR001005 -
Acco06g1677 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco06g1677 324 MobiDBLite consensus disorder prediction 271 302 - -
Acco06g1677 324 MobiDBLite consensus disorder prediction 271 297 - -
Acco06g1677 324 MobiDBLite consensus disorder prediction 168 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1677 Acco-ChrAcco06 11991941 11993104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1677 1 317 MYB Transcription Factor Family AT5G62470 50.992 3.07e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco06g1677 Myb_DNA-binding 4.4e-16 CL0123