LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g1663	ATGGCCTTCCCTCCTTCTCACACTTTCATGTTTCACACCAATCACTCCCATGAAGATCATCACCATCATCACGACCCCCACCTCTCTTCATCACCATCTCTAAAATCTTTCCCTTCATTACCACCCCAACACTTTCAAACTCGGAATAGTGCACCCTTCATGGTGAAGAGATCGATGTCGTTTTCAGGGGCAGAGAGCAAGTACGACATGGAGGCCGTGAACGGAGGCGATGACGATTTGTCGGACGATGGGTCGGTGCAGAAAGGGGAGAAGAAGAAGAGGCTGAACATGGAGCAGGTGAAGGCACTTGAGAAGAGCTTTGAGGTTGGGAACAAGCTTGAGCCAGAGAGAAAATTGGAGCTGGCTAAGGCTTTGGGGCTGCAGCCACGTCAGATCGCCATTTGGTTTCAGAACAGGAGAGCCCGATGGAAGACCAAGAACCTCGAGAAAGAATATGAGTCCCTCAAGAGACAGTTTGAAGCTCTCAAGGCTGATAACGATGCTCTTAACCTTCAGAACAAGAAACTTCATGCTGAGTTACAAGCTCTAAAAGGACGAGATCACCAGTGTGAAGGAGGAACAGTAGTGAGGCTGGTGAAGAAAGAAACGGAGGGTTCATGGAGCAATAATAATGGAAGTGACAACAGTTCAGACATCAATTTGGACCTTTCAAAAACACCACTTAGAGACAGTCCTGTTGGTAAAAGCCATCAGCTCGTAGCAGGCTCTAATAATAATCTAAAGCCCACCAGCATAACACAACTCCTCCAGTTCTCAACAAGATCAGACCTCCAAGACGAAACCTTCTCCAACATGTTCAACACCACCAACACTACGACTATCGATGATGGTCATAATCAGCAGCATAACTTCTGGACCTGGCCTCACGAGCACCACCACCATTTTCATTGA	912	0.4737	MAFPPSHTFMFHTNHSHEDHHHHHDPHLSSSPSLKSFPSLPPQHFQTRNSAPFMVKRSMSFSGAESKYDMEAVNGGDDDLSDDGSVQKGEKKKRLNMEQVKALEKSFEVGNKLEPERKLELAKALGLQPRQIAIWFQNRRARWKTKNLEKEYESLKRQFEALKADNDALNLQNKKLHAELQALKGRDHQCEGGTVVRLVKKETEGSWSNNNGSDNSSDINLDLSKTPLRDSPVGKSHQLVAGSNNNLKPTSITQLLQFSTRSDLQDETFSNMFNTTNTTTIDDGHNQQHNFWTWPHEHHHHFH	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g1663	303	Pfam	Homeobox associated leucine zipper	146	185	IPR003106	GO:0006355\|GO:0043565
	Acco06g1663	303	ProSiteProfiles	'Homeobox' domain profile.	86	146	IPR001356	GO:0003677
	Acco06g1663	303	Coils	Coil	138	186	-	-
	Acco06g1663	303	SMART	HOX_1	89	150	IPR001356	GO:0003677
	Acco06g1663	303	FunFam	Homeobox-leucine zipper protein ATHB-13	82	150	-	-
	Acco06g1663	303	Pfam	Homeodomain	91	144	IPR001356	GO:0003677
	Acco06g1663	303	CDD	homeodomain	91	147	IPR001356	GO:0003677
	Acco06g1663	303	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	58	229	IPR045224	GO:0003700
	Acco06g1663	303	MobiDBLite	consensus disorder prediction	12	29	-	-
	Acco06g1663	303	MobiDBLite	consensus disorder prediction	70	93	-	-
	Acco06g1663	303	Gene3D	-	83	154	-	-
	Acco06g1663	303	PRINTS	Lambda-repressor HTH signature	117	126	IPR000047	GO:0003677
	Acco06g1663	303	PRINTS	Lambda-repressor HTH signature	126	142	IPR000047	GO:0003677
	Acco06g1663	303	SUPERFAMILY	Homeodomain-like	78	148	IPR009057	-
	Acco06g1663	303	MobiDBLite	consensus disorder prediction	1	50	-	-
	Acco06g1663	303	ProSitePatterns	'Homeobox' domain signature.	121	144	IPR017970	GO:0000981\|GO:0006355
	Acco06g1663	303	MobiDBLite	consensus disorder prediction	30	50	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g1663	Acco-ChrAcco06	11876349	11878079	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g1663	1	295	Homeobox Transcription Factor Family	AT5G15150	45.231	3.75e-71	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Acco06g1663		Homeodomain	1e-15	CL0123