Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1650 ATGGAGGAGATAATTGTCGCTTTAAAGGATATGCCCCCATTGACGCGGATAGCAGAGGAAAGACACACTTTCTCAGCCATGGCAGATGGTCATCTCTTTAACAACATCGCTCTCAGTGGGCGTGGGGGCACTAATCAAGGACCGATGAGAATATATTCTGGAGGCATTTCATGGAAAAGACAGGGGGGTGGTAAAGCAATTGAGGTTGATAAAGCTGACATAATGGGAGTGACTTGGATGAAGGTCCCAAGAAGCAACCAACTTGGTGTTCGAACAAAAGATGGATTGTCCTACAAGTTCACGGGGTTCCGTGACCAGGATGTGGCAAATTTGAATAGCTTTTTCCAAAATACTTGTGGGATTACACCAGATGAAAAGCATCTTTCTGTTAGTGGGCGTAATTGGGGAGATGTTGATCTAAATGGAAATATGCTGACTTTCATGGTTGGCTCAAAGCAAGCTTTTGAGGTTTCTTTAGCAGATGTCTCTCAAACACAGCTTCAAGGGAAAAATGAGGTTACCTTGGAGTTTCATGTGGATGATACAACTGGAGCTAATGAGAAAGATTCTTTGATGGAGATAAGTTTTCACATACCAAACTCCAACACTCAATTTGTTGGTGATGAAAATAGTCCTCCTGCTCAGGTTTTCCGTGATAAAATCATGTCTATGGCAGACGTTGGTGCTGGAGGCGAAGATGCTGTTGTTACATTTGAGGGTATTGCTATTCTAACTCCAAGGGGTCGGTACAGTGTTGAATTGCATCTGTCATTCTTGCGGCTTCAAGGGATGGCCAATGATTTCAAAATCCAGTACAGCAGTGTAGTTCGCCTATTTTTACTTCCCAAGTCAAATCAGCCACATACCTTTGTTGTTATTAGTCTTGATCCACCAATTCGTAAAGGACAAACTTTGTACCCCCACATTGTCATGCAGTTTGAAACTGATTATGTAGTTCAAAGCACCTTGTCAATGGGTGAAGATCTTTACAACAGCAAGTACAAGGACAAGTTGGAGCTTTCATATAAGGGGCTTATTCATGAAGTTTTCACAACAATATTGCGTGGATTGTCTGGTGCCAAAGTTACCAAACCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTTTACCTAAACCGCCTACACTCATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATACTGCTGGGGGTTCAAATATGCATTATTTTGACCTTCTTATTAGACTAAAAACTGAGCAAGAGCATCTATTCCGTAATATTCAGAGAAATGAATACCACAATCTTTTTGACTTTATCAGTTCAAAGGGCTTGAAAATTATGAACCTTGGAGGTAGCCAAGCCGCTGATGGCGTTGCCGCTGTTCTTCAAGAAGATGATGATGATGCTGTTGATCCTCATCTTGAGCGCATAAAAAATGCAGCTGGTGGAGATGAGAGTGACGAAGAGGATGAGGATTTTGTTGCCGATGAGGATGATGGCGGTTCTTCAACAGACGATTCTGGAGAAGATGAGTCTGATGCAAGTGAAGGTGGTGGGAAGGAGAAGCCCATCAAAAAGGAATCAAAGAAGGAACTGTCTTCTAAGGCATCTACTTCTAAGAAGAGATCTAAAGATGGAGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGATCCTAATGCACCAAAAAGGGCATTATCTGGTTTCATGTTCTTTTCCCAAATGGAGAGAGAGAATCTGAAGAAAAGCAATCCTGGAATTTCATTTACGGATGTGGGAAGGGTACTTGGAGAGAAATGGAAGAAGATGTCAGCGGAGGAGAAGGAACCATATGAAGCAAAAGCTCGTGCTGATAAAAAGCGTTACAAGGATGAGATCAGTGGGTACAAGAATCCGCAACCTATGAACGTAGACTCAGGAAATGAATCTGATAGTGCTTGA 2001 0.4173 MEEIIVALKDMPPLTRIAEERHTFSAMADGHLFNNIALSGRGGTNQGPMRIYSGGISWKRQGGGKAIEVDKADIMGVTWMKVPRSNQLGVRTKDGLSYKFTGFRDQDVANLNSFFQNTCGITPDEKHLSVSGRNWGDVDLNGNMLTFMVGSKQAFEVSLADVSQTQLQGKNEVTLEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENSPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGMANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMGEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGSQAADGVAAVLQEDDDDAVDPHLERIKNAAGGDESDEEDEDFVADEDDGGSSTDDSGEDESDASEGGGKEKPIKKESKKELSSKASTSKKRSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKSNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDSA 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1650 666 SUPERFAMILY HMG-box 569 651 IPR036910 -
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 267 283 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 245 261 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 355 368 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 290 306 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 426 442 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 400 417 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 382 400 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 PRINTS Structure-specific recognition protein signature 442 460 IPR000969 GO:0003677|GO:0005634
Acco06g1650 666 CDD PH2_SSRP1-like 368 467 - -
Acco06g1650 666 Gene3D - 24 118 IPR011993 -
Acco06g1650 666 FunFam Fact complex subunit ssrp1 225 364 - -
Acco06g1650 666 Pfam Structure-specific recognition protein (SSRP1) 132 200 IPR024954 -
Acco06g1650 666 MobiDBLite consensus disorder prediction 502 530 - -
Acco06g1650 666 MobiDBLite consensus disorder prediction 496 589 - -
Acco06g1650 666 FunFam FACT complex subunit SSRP1 27 119 - -
Acco06g1650 666 Gene3D - 365 474 IPR011993 -
Acco06g1650 666 FunFam FACT complex subunit SSRP1 365 474 - -
Acco06g1650 666 Gene3D - 225 364 - -
Acco06g1650 666 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 582 650 IPR009071 -
Acco06g1650 666 Gene3D - 123 205 IPR038167 -
Acco06g1650 666 PANTHER FACT COMPLEX SUBUNIT SSRP1 27 635 - -
Acco06g1650 666 Gene3D High mobility group box domain 565 660 IPR036910 -
Acco06g1650 666 MobiDBLite consensus disorder prediction 623 666 - -
Acco06g1650 666 MobiDBLite consensus disorder prediction 652 666 - -
Acco06g1650 666 CDD HMG-box_AtSSRP1 578 653 - -
Acco06g1650 666 SUPERFAMILY PH domain-like 232 466 - -
Acco06g1650 666 SMART hmgende2 581 651 IPR009071 -
Acco06g1650 666 CDD PH1_SSRP1-like 233 366 - -
Acco06g1650 666 Pfam Histone chaperone Rttp106-like 376 465 IPR013719 -
Acco06g1650 666 MobiDBLite consensus disorder prediction 623 647 - -
Acco06g1650 666 FunFam FACT complex subunit SSRP1 565 659 - -
Acco06g1650 666 SMART Rtt106_2 374 467 IPR013719 -
Acco06g1650 666 Pfam POB3-like N-terminal PH domain 33 123 IPR035417 -
Acco06g1650 666 FunFam FACT complex subunit SSRP1 122 205 - -
Acco06g1650 666 Pfam HMG (high mobility group) box 582 650 IPR009071 -
Acco06g1650 666 MobiDBLite consensus disorder prediction 531 573 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1650 578 650 ARID Transcription Factor Family AT1G04880 39.726 2.90e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco06g1650 Rtt106 2.3e-20 CL0266