Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1647 ATGGCAGAAAGTACAGCTAGAGTTATGCTACTACTGTTAATGGCTACCTTAGCCATTACAGTTCCATGCCTCGTCAACGCTAACATCGGAGAGTTCGACGATTATCTTCTCGAAAAAGCCAAGGAGGCCCGAAGAATAGCTCTTGAAGCATACGAACCAGACCCTTTGAACATCACTTATGAGCTCAACATGCACGTTCATCTGGCGATGAATGAAGCCAACATTATCATCAACAACCATACGAGAGGGAGGGACCTTGGGGAGAGGAAGAAGAGAGGACCGTGCCTGGCCACCAACCCAATCGATCGATGCTGGAGATGCGACAGAAACTGGGAGATGAATCGCTTTAAGTTAGCCACATGTGCGATGGGCTTTGGTCTCAAAACCACCGGCGGGTTGGGCGGTAAGATCTACGTCGTGACGGATCCTTCCGACGCTGACGTGGCTAACCCGAAACCCGGAACTCTGAGGTACGGAGCGATTCAGAAGGAGCCATTATGGATCATATTCGCGCATAGCATGGTGATCAAGTTGCAACAGGAGTTGATGATTAATTCCGACAAGACGATCGACGGAAGGGGAGCCAATATTCAGATAAAGAGCGGCGGCGGCCTCACTCTGCAATTCGTTAAGAACGTCATCATCCACAACCTTCGCATTCGCAATATCAAAACTAAGAAGGGTGGTATGATAAGGGACAGCCCGAACCATATCGGGCCGAGAACCAGAAGCGACGGAGACGCCGTAAGTATCTTCGGTTCCACCAACGTCTGGATCGATCACATTTCCATGTCCAACACCGACGATGGGCTGATCGACGCCATCATGGGTTCTACCGCCATTACCATTTCAAATTGCCACATGACCAGACACAACGATGTGATGCTGTTAGGAGCCGGAGACGTGTATGTACAGGACAAGTTGATGCAGATAACGGGGGCGTTCAACCACTTCGGGAACGGACTGATACAGAGGATGCCGAGATGCAGACATGGGTGGTTCCATGTGGTGAACAACGACTACCATAACTGGATAATGTATGCCATCAGAGGAACGGCGAATCCGACCATACTTAGCCAAGGAAACCGATTCATTGCTCCGAACAAATCGGCAGCGAAGCAGGTTACGAACAGAATGGGTGCGCCACCATTTTTGTGGAAAGACTGGCGGTGGCAGTCGGTGGGAGACGAGTTTGTGAACGGAGCTTTTTTTGTACCATCGGGAATACGTATAACATCAACTCCAACTAATTTCGGTAAAGAGAATTTGATACAGCCCAGACCTGGGAACGAAGCTCCCCTATTGGCCCGCTATTCCGGTCAGCTCAATTGCCGGGCCGGCAAGCCTTGTTAG 1353 0.5026 MAESTARVMLLLLMATLAITVPCLVNANIGEFDDYLLEKAKEARRIALEAYEPDPLNITYELNMHVHLAMNEANIIINNHTRGRDLGERKKRGPCLATNPIDRCWRCDRNWEMNRFKLATCAMGFGLKTTGGLGGKIYVVTDPSDADVANPKPGTLRYGAIQKEPLWIIFAHSMVIKLQQELMINSDKTIDGRGANIQIKSGGGLTLQFVKNVIIHNLRIRNIKTKKGGMIRDSPNHIGPRTRSDGDAVSIFGSTNVWIDHISMSNTDDGLIDAIMGSTAITISNCHMTRHNDVMLLGAGDVYVQDKLMQITGAFNHFGNGLIQRMPRCRHGWFHVVNNDYHNWIMYAIRGTANPTILSQGNRFIAPNKSAAKQVTNRMGAPPFLWKDWRWQSVGDEFVNGAFFVPSGIRITSTPTNFGKENLIQPRPGNEAPLLARYSGQLNCRAGKPC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1647 450 SMART amb_all 173 370 IPR002022 -
Acco06g1647 450 Gene3D - 98 443 IPR012334 -
Acco06g1647 450 Pfam Pectate lyase, N terminus 28 82 IPR007524 GO:0030570
Acco06g1647 450 SUPERFAMILY Pectin lyase-like 99 419 IPR011050 -
Acco06g1647 450 Pfam Pectate lyase 180 364 IPR002022 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Acco06g1647 450 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Acco06g1647 450 PANTHER PECTATE LYASE 18-RELATED 43 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1647 Acco-ChrAcco06 11754136 11756052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1647 9 450 Polysaccharide Lyase AT1G14420 54.867 8.14e-170 483