Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1622 ATGAGTTTGAGCTCCTCGTACCACAGAACAGAAATTTTCCTGCACACTTCTTATGAATCTTCCTTCGCTGCCTATCCCAATTCTTCTCTCCGACATACAGATCATCTGCTTGCTCTTTCCGCAGCATATTTTCTTGACAAAATCTACCATCTGCGAGGGGCTGATATGAAGAGGAGTAGGGACGATGCTTATGCTTCTTCTCAATTAAAGCGACCCATGAGTTCTTCACGTGGGGATTCCTATGGCCAATCCCAAATCCCTGGAGGAGCAGGAGGAGGAGGAGGAGTGGGAGGGGGGGCTACTTCACAGAAATTGACTACCAATGACGCTTTATCATATTTGAAGGAGGTGAAAGATATGTTTCATGACCAAAGAGAAAAATATGACATGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAATTATTCAAAGGGCATAATAACTTGATTTTTGGATTTAACACCTTCTTGCCTAAGGGGTACGAGATTACCCTTGATGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATAAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATATTGAACATGTATCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTTGCTACCCTTTTTGAGGACCATTCAGATTTACTTGAAGAGTTTACTAGATTCTTACCAGATACTTCTGCAACACCTTCTACACAGCATGCTCCTTATGGTCGAAATTCATTTCCACGTTTTAGCGAGCGGGGTTCTACAGCACCCATGATACGGTCAATGCAAGTGGAAAAGAACCGTTATCGACGGGAAAGGCTTACTTCTCATGATCGTGACCCAAGTGTTGATCGTCCTGAACTGGATGATGACAAGGCACTAATGAAATCTCACAAGGAGCCGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGATCAGGATGACAGAGAACATGATCATGATAATAACAGGGATTTAAAATCACGATTTTCTGACAAAAAGATATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCCACTGATTTTGCTTCTTATGATGACAAAGATACCTTAAAGGGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAGGTTAAGGAGAAGTTGGGCAGTTCAGATGACTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTCGGAAAGTACCCTGATCTTATGGATGAGTTCAATGAGTTCTTGGAGCGGTGTGAAAATATTGACGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTAGGCAGTGACGGTCAATTATCCAGAACTTTAAAGTTGGAGGACAGAGACAAAGACCAGAAGCGCGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGGAAATCCATTCAAGAACTTGACTTGAGTAACTGTCAACTTTGCACTCCAAGCTATCGACTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGACTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAACGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATATAAGGTGCATTGAACGCCTGTATGGAGACCATGGACTTGATGTACTGGACATATTACGAAAAAATCCAACTCATGCACTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAAGAAGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTACGCTAAAAACCACTACAAATCACTTGATCATCGGAGTTTCTATTTCAAGCAGCAAGATTCAAAGAACTTGAGCACTAAATCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAGCAGAAAGAATATGATATTCTTCAGGCTATCGCTGCTGGAAATAAACAGCCTTTAATTCCACATCTAGAGTTTGAATATTCGGATGTTGGGATTCATGAGGACCTATATAAACTTATTCGTTATTCATGTGAGGAGATCTTCTCAAGTAAAGATATGTCAAATAAAATTATGAGACTTTGGACTACTTTTTTGGAGCTGATACTTGGTGTTCCCTCTCATACTCATGGGACAGAAAATGTGGAGGACAGGAAAACTGGGCAACGTGTTGCCCATTTTGTTTCATCAAAGACAGGAGGTGATGGCAACTCCAACGGAGATCCTGCTCTAATGAATTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAAATGAGGTAAAGAATGGTCAACAGTCTAGTTTAGCAGCCAATGACAAAGAAAATGGACCTGTTGACTGTGACCGTGCTAGTAGAGATTATCATCTAATGGATAAAGGGAAGAACAGTGCAGATTGTAGTGAAAAAATCTCTGGTTTTAGTAAACAGGTTGCCTCTGATGAGCAATTAGCTATCAATAACACTTCAATTGCAGTTAGAGGAGAAACCAGCATGACCAAGACCAGCTTAGAAATTGTTTCAGGCTCTGTGCTTAATCCAGGAAGACCAACTGCTACACTAGGTGTTGATGATGGTGTTGCCATTTCTCTGGGTGGTAGTGGACCTTTGATGGAGGGACGGGATATTGCTCTTCCACTTCCATTAGCTAATGGAGTGCTAATCGAAAGCAATACAGTCAAGAGTCATGAAGAATCTGCCAGACCTTACAAAGCTGAAAAGGAGGAGGGTGAATTATCTCCCAATGCTGACTCAGAGGAAGATAATTTTGTTGCCGCGTATGGAGACTCCAACTGGCAGGCACTGCCCAAGTCAAAGCATAATATTGAAAGAGGTAATTATAAATCTAGAAATGGGGAGGAAGAATGCTGTCCAGGTGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGATAATATTTCTGAAGCTGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGGGAAGAGCATGAGGAGGATGAAGATATGGAACGTGATGATGTTGAGGGTAAGGTTGAGAGTGAAGGCGAAGCTGAGGGCATATGTGATGCACAATCTGCTGGAGGAGAGGGCTCATCATTGCCATTATCAGAAAGGTTCCTTTTGTCAGTAAAGCCTCTCACGAAGCGTGTTTCTGCACTTTCACTTGTTGAGGAAATAAATAATTCCAGGCTTTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCATATACTTTTTGAAAGGATCTCATTAGCGAAAAAATATTCAGTGAGTGCCCAACCAAAATGGAAAACAACAAAGGAGGCTTCTTCCCCAGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGTAAAGTTTGAAGATGAATGCCGAGCAATAATTGGAAACCAGTCATATGTATTATTTACATTGGACAAGTTGATATATAAGTTGGTCAGGCAGCTTCAAACAGTTGTAACAGATGAGATAGACAATAAACTTCTCCAACTATATGAGTATGAAAAGTCACGAAAACCAGGGAAATTAGCTGATTCAGTCTATTATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGGATTGAATGTTCATGTACTCCCTCTCGAGTGTTGGTTCAGCTGATGGACAATATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATTGATCCAAATTTTTCCTTTTATCTGTACAATGATTTTCTGTCTGTCTCTCCTGGTAAAAAGGAACCTCATGGCATTATGCTGCAAAGAAACAAGCGCAGATATAGAGATCTGGATGAACTTACATCTATGTGTTTAGCCATGGAAGGTGTTAAAATAATAAATGGATTGGAATGTAAGATAGCTTGCAGCTCGTCCAAGATTTCCTATGTTCTGGACACGGAAGATTTTTTCTTTCGCACCAAAAAGCAAAGAACATCGTCATCATCAGGGACCGCATCTTCCCAGCATCATCAAGCTAGACAGGAAAGATTTCACAGATTCTTATCAGTTTCATAA 4335 0.4074 MSLSSSYHRTEIFLHTSYESSFAAYPNSSLRHTDHLLALSAAYFLDKIYHLRGADMKRSRDDAYASSQLKRPMSSSRGDSYGQSQIPGGAGGGGGVGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHSDLLEEFTRFLPDTSATPSTQHAPYGRNSFPRFSERGSTAPMIRSMQVEKNRYRRERLTSHDRDPSVDRPELDDDKALMKSHKEPRKRVDKESRDRKIRDQDDREHDHDNNRDLKSRFSDKKISVKKAEGFGLATDFASYDDKDTLKGMYNQAFSFCEKVKEKLGSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLGSDGQLSRTLKLEDRDKDQKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMEAPICIEDHFSALNIRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQQKEYDILQAIAAGNKQPLIPHLEFEYSDVGIHEDLYKLIRYSCEEIFSSKDMSNKIMRLWTTFLELILGVPSHTHGTENVEDRKTGQRVAHFVSSKTGGDGNSNGDPALMNSRLPKSDNEVDGRVNEVKNGQQSSLAANDKENGPVDCDRASRDYHLMDKGKNSADCSEKISGFSKQVASDEQLAINNTSIAVRGETSMTKTSLEIVSGSVLNPGRPTATLGVDDGVAISLGGSGPLMEGRDIALPLPLANGVLIESNTVKSHEESARPYKAEKEEGELSPNADSEEDNFVAAYGDSNWQALPKSKHNIERGNYKSRNGEEECCPGAGGDNGADADDEDSDNISEAGEDASGSESAGDACSREEHEEDEDMERDDVEGKVESEGEAEGICDAQSAGGEGSSLPLSERFLLSVKPLTKRVSALSLVEEINNSRLFYGNDDFFVLFRLHHILFERISLAKKYSVSAQPKWKTTKEASSPDPYSRFMNALYNLLDGSADNVKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVVTDEIDNKLLQLYEYEKSRKPGKLADSVYYANARVILHDENIYRIECSCTPSRVLVQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIMLQRNKRRYRDLDELTSMCLAMEGVKIINGLECKIACSSSKISYVLDTEDFFFRTKKQRTSSSSGTASSQHHQARQERFHRFLSVS 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1622 1444 MobiDBLite consensus disorder prediction 62 101 - -
Acco06g1622 1444 MobiDBLite consensus disorder prediction 821 879 - -
Acco06g1622 1444 MobiDBLite consensus disorder prediction 989 1007 - -
Acco06g1622 1444 MobiDBLite consensus disorder prediction 988 1013 - -
Acco06g1622 1444 ProSiteProfiles PAH domain profile. 187 257 IPR003822 GO:0006355
Acco06g1622 1444 MobiDBLite consensus disorder prediction 484 506 - -
Acco06g1622 1444 SUPERFAMILY PAH2 domain 393 458 IPR036600 GO:0006355
Acco06g1622 1444 ProSiteProfiles PAH domain profile. 103 173 IPR003822 GO:0006355
Acco06g1622 1444 FunFam Paired amphipathic helix protein Sin3 109 171 - -
Acco06g1622 1444 ProSiteProfiles PAH domain profile. 389 458 IPR003822 GO:0006355
Acco06g1622 1444 Pfam Sin3 family co-repressor 526 616 IPR013194 -
Acco06g1622 1444 Coils Coil 718 738 - -
Acco06g1622 1444 MobiDBLite consensus disorder prediction 821 838 - -
Acco06g1622 1444 MobiDBLite consensus disorder prediction 854 868 - -
Acco06g1622 1444 FunFam Paired amphipathic helix SIN3-like protein 186 257 - -
Acco06g1622 1444 MobiDBLite consensus disorder prediction 255 358 - -
Acco06g1622 1444 FunFam Paired amphipathic helix protein SIN3 387 460 - -
Acco06g1622 1444 Pfam C-terminal domain of Sin3a protein 1162 1410 IPR031693 -
Acco06g1622 1444 MobiDBLite consensus disorder prediction 68 83 - -
Acco06g1622 1444 SUPERFAMILY PAH2 domain 184 256 IPR036600 GO:0006355
Acco06g1622 1444 Gene3D Paired amphipathic helix 387 460 IPR036600 GO:0006355
Acco06g1622 1444 MobiDBLite consensus disorder prediction 291 358 - -
Acco06g1622 1444 SUPERFAMILY PAH2 domain 99 172 IPR036600 GO:0006355
Acco06g1622 1444 PANTHER SIN3B-RELATED 102 1306 IPR039774 GO:0003714
Acco06g1622 1444 MobiDBLite consensus disorder prediction 255 288 - -
Acco06g1622 1444 Gene3D Paired amphipathic helix 186 258 IPR036600 GO:0006355
Acco06g1622 1444 MobiDBLite consensus disorder prediction 1038 1126 - -
Acco06g1622 1444 Pfam Paired amphipathic helix repeat 411 455 IPR003822 GO:0006355
Acco06g1622 1444 Pfam Paired amphipathic helix repeat 126 170 IPR003822 GO:0006355
Acco06g1622 1444 Pfam Paired amphipathic helix repeat 210 254 IPR003822 GO:0006355
Acco06g1622 1444 Gene3D Paired amphipathic helix 109 171 IPR036600 GO:0006355
Acco06g1622 1444 SMART hdac_interact2seq4b 522 622 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1622 Acco-ChrAcco06 11527308 11537902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1622 92 206 WRKY Transcription Factor Family AT4G12020 50.862 2.91e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco06g1622 Sin3a_C 3.8e-54 No_clan