Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1594 ATGTCGAGGAACATGTATGGGTGGTTTTTTAATCACACCCATTTGAAGATGGCCTGGATACCTCAGCGAATCCAGGAAAAAGATGGGTATTTGAATTACCCACCTCCGGTTTTGCCTTCATATCCATCTCCTTTCCCAGGTTCTCTCCGCAATGAATCAATTCCGTCTTCGTCTTCACCTTCATCTGGTGGCAGTACTAGAATTAGTCCGGCTGTTCTTTTCGTTATAGTGATTCTGGCCTTGCTGTTCTTCGTATCTGGTCTGCTTCATCTGCTTGTTAGATTTCTCGCAAAGCACCCATCAGCTGGTCCATCGGCTCAATCCAATGGACATCAGGACATTGCTGGCTCCGATGCTTTGCAGAGACAGCTGCAACAGCTTTTCCATCTCCATGACTCAGGGCTGGATCAGGCTTTTATTGATGCGCTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTCTGAAAGAACCATTTGACTGTGCAGTTTGTCTCTCTGAATTCTCTGCAAACGATAAGCTGAGGCTGCTTCCTACTTGCAGCCATGCCTTTCACATTGATTGCATAGACACCTGGCTTCTATCCAACTCGACATGTCCACTCTGTAGAGGAACTTTGTTCTCCCCCGGACTCTCTGTCGAAAACCCGATGTTTTATTTTGATGATATGAGGGAAGAAGATGGTTGCCCTTGCAATGGAGAAAGCGGGGTAACTCCCAGACAAAAAGCTGTGGAAATTGAAGAAATTGTTGAGAAAGCGGTTCTTCCTGTAAGACTTGGTAAATTCAGGAGGCTTGATATGGATACAGGGGATAATGCAGGAGGTGAAACCAGTAGCAGCAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTACGTGCTTGGCAACTCAGACCTGCGAATTACCTTGAACGGTGACAGAGAGCTCTCCGAAGGAACAGAACAGACTGATAAGCTTTCAACGGAGGGTGATAAGGAAGCCAAAAAGATTACTAGTGTGAGTAAGGGTGAGAGCTATTCTGTTTCAAAAATCTGGCAGTGGTCCAACAAGGGGAAATTCTCAAGTTCTTCAAATGATCACATGGGCATGCCATCTTCTCTCAACACAGATTTGCCATGGATGAGAACGGAAGGGACCTAA 1146 0.4555 MSRNMYGWFFNHTHLKMAWIPQRIQEKDGYLNYPPPVLPSYPSPFPGSLRNESIPSSSSPSSGGSTRISPAVLFVIVILALLFFVSGLLHLLVRFLAKHPSAGPSAQSNGHQDIAGSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIVGLKEPFDCAVCLSEFSANDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGTLFSPGLSVENPMFYFDDMREEDGCPCNGESGVTPRQKAVEIEEIVEKAVLPVRLGKFRRLDMDTGDNAGGETSSSNLDARRCFSMGSYQYVLGNSDLRITLNGDRELSEGTEQTDKLSTEGDKEAKKITSVSKGESYSVSKIWQWSNKGKFSSSSNDHMGMPSSLNTDLPWMRTEGT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1594 381 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Acco06g1594 381 CDD RING-H2_EL5-like 159 202 - -
Acco06g1594 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 64 347 - -
Acco06g1594 381 SMART ring_2 160 201 IPR001841 -
Acco06g1594 381 MobiDBLite consensus disorder prediction 308 327 - -
Acco06g1594 381 MobiDBLite consensus disorder prediction 356 381 - -
Acco06g1594 381 SUPERFAMILY RING/U-box 139 208 - -
Acco06g1594 381 Pfam Ring finger domain 159 202 IPR001841 -
Acco06g1594 381 FunFam RING-H2 finger protein ATL46 122 207 - -
Acco06g1594 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 207 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1594 Acco-ChrAcco06 11311746 11312891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1594 57 359 C3H Transcription Factor Family AT2G18650 42.059 2.57e-55 186