Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1548 ATGGCTCGTCTCGCAGCTTGCTTTCTTCTTCTCTCTTGCTCTCTCGTTATTTCCTGCGTCTTCGCAGTTCAAGACCCCGAGCTAGTTGTACAAGACGTAAACAGAAGAATCAATGCTTCTAGAAGGAATTTGGGGTATTTATCATGTGGAACCGGCAACCCCATTGACGACTGCTGGCGGTGCGACCCCAACTGGGAGAGGAACCGGCAGAGGCTAGCCGACTGCGCCATCGGCTTCGGCAAGGACGCCATCGGGGGAAGAAACGGTAGGGTCTACGTGGTGACGGACTCTGGCGACGACGACCCGGTGAACCCAAAGCCAGGAACGTTGAGATACGCCGTCATACAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTGATAACACTAAAGCAAGAGCTGGTGATGAACTCGTTCAAGACCATTGACGGGAGAGGAGCGAGCGTTCACATTGCCGGCGGCGGGTGCTTAACGATACATTACGTCAGCAATATTATCATCCACGGCATTCACATTCATGACTGTAAGCCCACCGGCAATGGTGATATCAGAGATTCTCCTCACCATTATGGGTGGTGGACGGTGTCGGACGGCGACGGAATCTCAATATTTAATTCCAGGCATATCTGGGTTGACCATTGCTCGCTCTCTAATTGCCGTGACGGTCTCATTGACGCTATCCATGGATCCACCGCTATCACCATCTCCAACAATTACATGACTCACCACGACAAAGTCATGCTCTTGGGCCACAGTGATTCTTACACTCAGGACAAGAACATGCAGGTCACTATCGCCTTCAACCACTTCGGAGAAGGCCTCGTCCAGAGAATGCCAAGGTGTAGGCACGGGTACTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATAGGTGGGAGTGCTAATCCGACGATAAACAGCCAGGGGAATAGGTTTTTGGCGCCGGATAATAGGTTTAGCAAGGAGGTGACCAAGCACGAGGATGCTTCTGAAGGAGAGTGGAGGAACTGGAACTGGAGATCCGACGGTGACTTGTTCTTGAACGGAGCTTATTTCCGGCAATCCGGTGCCGGAGCTTCTTCCAGCTACGCTAGGGCTTCAAGTCTCAGTGCAAGGCCTTCTTCTCTTGTTGGCTCCATGACCACGACGGCTGGTGTACTCACGTGCAGGAAGGGCGTGCGTTGCTGA 1206 0.5191 MARLAACFLLLSCSLVISCVFAVQDPELVVQDVNRRINASRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRVYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCLTIHYVSNIIIHGIHIHDCKPTGNGDIRDSPHHYGWWTVSDGDGISIFNSRHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASEGEWRNWNWRSDGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTTTAGVLTCRKGVRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1548 401 SMART amb_all 127 324 IPR002022 -
Acco06g1548 401 SUPERFAMILY Pectin lyase-like 53 392 IPR011050 -
Acco06g1548 401 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Acco06g1548 401 FunFam Pectate lyase 52 394 - -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Acco06g1548 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Acco06g1548 401 PANTHER PECTATE LYASE 18-RELATED 24 398 IPR045032 GO:0030570
Acco06g1548 401 Gene3D - 52 394 IPR012334 -
Acco06g1548 401 Pfam Pectate lyase 133 318 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1548 Acco-ChrAcco06 10884619 10886003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1548 9 401 Polysaccharide Lyase AT5G63180 76.000 0.0 627