Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1511 ATGGGTCGTGTGGTGGTGCTGGTGGTGGCGCTGGTGGTGGTGCAGTTATTTGGAGGCTCATACTCAGATGATGACGTCGTCATGGATAACATGAGATTCGAGACGACGATGAGGATAGGAGCGGTGCTTGATTTAGGATCGCGCATGGGAAAAGAGCAAAAGATAGCCATGGAAATCGCCGCACAAGAATTCAATTGCCTGATCTTCCATTTCCACCATTCTCACGGCAGCTCCGCTGCATCTGTCGGCGCCGGTAACTTCCGCTTGATGGATCTCGCTCGTAGCAAGCAAGTGCAAGCTATCATAGGGACGATAACACACAGCGAAGCGACTATGGCAGTTGAAGCTAACAACACGTCGAAGAACCTTCCTATCTTATCCCTCACTTCACTTGCAGTGAGCAGAGACACAGATATATTGCCATACTTCATCCAGTTGGGCACCGATATTACCTTCCACATTCGATGCTTTGCCGCCATTGTTGAAGAATTCAAGTGGCCCAAAGTGACAGCAATCTATGAACAAAAAAACGGCGTTTTCTCTGATCCAAAGATGCTAACCCTCTTTTACCATTCTCTTCGCCTTGTTGGTGCTGAGATTGTTGACCATTCAGCTCTGCCTTGTCTGTCTTCTCTGTCAAACCCTAGAGTTACTATTGAAAGAGAACTTAGCAGGCTCAAGAGCAACAATGACAGGGTTTTCTTGGTTGTTCAAGCTTCTTTGGAGATGGCGAATCTTCTTCTAGAGATGGCAAAGCAAATGGGTTTGAGGGGGGAAGAATCGGTATGGATCGTACCTGATGAGGTTGCTGGTCTCATTGATTCGGCGAATTCCTCTTTTATTCTTAATATGCTAGGCGTTGTTGGATTTAAATCCCACTTTAATGAAATGAGCGAGACATTCAGACAATTCAGATTCAAATTTCGAAGAAAATTCGCGTTGGAGTACCCCGAAGAAGAGAACATTAACCCCAGTATCTTTGCGCTTCGATCATACGATGCAATTTGGGCTATTGCTCTCGCCGCAAAGAAATCACAGAGGAAGTTCTCCCAGGGAGAATTTTCAGAAAGCATTCTTGCCAGTAACTTTGAAGGACTAAGTGGCAATATTAGCTTTAAAAATGGTAAGTTATTGCGATCACAAGCCTTTGACATAATTAACGTGATTGGGAAAAGCTATAGAGATTTGGCATTTTGGTCTCCACCATTTGGTTTCTCCATGAACTTCGCCAGACGTCAGTTAATGGAGGTGACAAAAAATAATGATTCTATTGGAACCTTAGAAACAGTTCATTGGCCAGGGAACTTACTTTCAGTTCCCAAGGGTTGGACTTACGGAAATGAGGGAAAAACATTCAGAATAGGTGTGCCTGCAAAAGGTGCCTTTACCCAGTTTGTGAATGTGACTTATGATCAGAGTCGGAATGAAACTTCTATCACAGGTTTCTCAATTGATGTCTTCAAAGCTGCAGTTGAACGCCTGCCTTATCACTTGCAGTATGAATTTATACCAGTCAACTGCTCTTATGATGAAATGGTTCAAAAAGTCTACAAGAAGGAACTTGATGCTGCTGTTGGAGATACAGAAATAATGGCATATAGATATCGTTATGTCATATTTTCTCAACCATATGTTGAATCTCACCTTGACATGGTGGTAACTGTAAATCCCAATAAATCAAAAGAAACATGGATGTTCACGAGCGCCTTCACAAAAGAGGCGTGGCTGGTGATGGCAGCAATGCACATTTTCATCGGATTTATCATCTGGCTGATGGAACGGCAAGCGAATGAACAATTGAGGGGACTTGGGGCTATGCTTTGGTTTTTAGTCACTGTAATCTTCTATGCACACAGAGAACCAGTCAAAAACCCTTTTGCTCGAATTGTGTTGGCACCATGGTTGTTCATAATCCTTATTCTCACGACAAGTTTTACAGCTAGTTTGACTTCCATGATGACCATCAGTCAGCTTGAACCGTCTGTGTTAGACATCCAAACCCTTCGAAGGACAAATGCCCCTGTTGGGTGCAATGGAAATTCATTTATCGTGAGATATTTGATAGACATACTAAAATTTAAGCCCAAGAATATTCGGAAAATTGATTCCATAAGTGATTACCCTACTGCCTTTAAGAACAGGGACATTGAAGCAGCTTTCTTTGTTGCACCACATGCTAAAGTCTTCCTTGCCAAGTACTCATGCGCAGGCTTCGTCAAAGCAGGGGACACTTTCAAGCTTGGAGGCTTTGGATTTGCTTTTCCAAAAGATTCCTCCAAACTTGCTAGTGACATATCAGCGGCAGTGCTGAAAGTGATAGAGGATGGAGAAACACAACAATTAGAAGATGATATGATATCGACAGTTAGTTGCTCCACTGCATATGACAAGAACCAAGAAGATAGATCATTGGGAATTCAGCCTTTCCTTGGCCTGTTTTACATTTCTGCAATTGTTGCTGTTCTTGCTGTCCTTGCATGA 2481 0.4297 MGRVVVLVVALVVVQLFGGSYSDDDVVMDNMRFETTMRIGAVLDLGSRMGKEQKIAMEIAAQEFNCLIFHFHHSHGSSAASVGAGNFRLMDLARSKQVQAIIGTITHSEATMAVEANNTSKNLPILSLTSLAVSRDTDILPYFIQLGTDITFHIRCFAAIVEEFKWPKVTAIYEQKNGVFSDPKMLTLFYHSLRLVGAEIVDHSALPCLSSLSNPRVTIERELSRLKSNNDRVFLVVQASLEMANLLLEMAKQMGLRGEESVWIVPDEVAGLIDSANSSFILNMLGVVGFKSHFNEMSETFRQFRFKFRRKFALEYPEEENINPSIFALRSYDAIWAIALAAKKSQRKFSQGEFSESILASNFEGLSGNISFKNGKLLRSQAFDIINVIGKSYRDLAFWSPPFGFSMNFARRQLMEVTKNNDSIGTLETVHWPGNLLSVPKGWTYGNEGKTFRIGVPAKGAFTQFVNVTYDQSRNETSITGFSIDVFKAAVERLPYHLQYEFIPVNCSYDEMVQKVYKKELDAAVGDTEIMAYRYRYVIFSQPYVESHLDMVVTVNPNKSKETWMFTSAFTKEAWLVMAAMHIFIGFIIWLMERQANEQLRGLGAMLWFLVTVIFYAHREPVKNPFARIVLAPWLFIILILTTSFTASLTSMMTISQLEPSVLDIQTLRRTNAPVGCNGNSFIVRYLIDILKFKPKNIRKIDSISDYPTAFKNRDIEAAFFVAPHAKVFLAKYSCAGFVKAGDTFKLGGFGFAFPKDSSKLASDISAAVLKVIEDGETQQLEDDMISTVSCSTAYDKNQEDRSLGIQPFLGLFYISAIVAVLAVLA 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1511 826 Gene3D - 755 782 - -
Acco06g1511 826 Gene3D - 451 573 - -
Acco06g1511 826 Pfam Receptor family ligand binding region 88 389 IPR001828 -
Acco06g1511 826 FunFam Glutamate receptor 563 696 - -
Acco06g1511 826 FunFam Glutamate receptor 447 562 - -
Acco06g1511 826 Pfam Bacterial extracellular solute-binding proteins, family 3 476 783 IPR001638 -
Acco06g1511 826 CDD GluR_Plant 450 786 - -
Acco06g1511 826 Gene3D - 346 450 - -
Acco06g1511 826 FunFam Glutamate receptor 153 322 - -
Acco06g1511 826 Gene3D - 691 754 - -
Acco06g1511 826 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 825 IPR015683 -
Acco06g1511 826 PIRSF IGluLR_plant 1 826 IPR017103 -
Acco06g1511 826 SUPERFAMILY Periplasmic binding protein-like I 33 443 IPR028082 -
Acco06g1511 826 SUPERFAMILY Periplasmic binding protein-like II 427 783 - -
Acco06g1511 826 Pfam Ligand-gated ion channel 784 818 IPR001320 GO:0015276|GO:0016020
Acco06g1511 826 SMART GluR_14 451 788 IPR001320 GO:0015276|GO:0016020
Acco06g1511 826 Gene3D - 150 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1511 Acco-ChrAcco06 10616721 10621203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1511 92 825 Ion Channels AT5G11210 31.928 2.75e-114 365