Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1498 ATGTCCATTTCAATGGCGCCCAAATCTTGTTCTTTACGCATTCCTTTGATTCTGACTGGGGTTGTTCCAATGGGGGATGATTCCAGTAATCGTGAAGAAACAGTAGCGATTCACTGCCTTGAAGGGGAAGCTGAAGCTGAAGCAGAAGCAGAAGAGAGAGATCCAGAAAGCAATCCGCTGAATGAGTCACTGCTCAAGAGGAACCGCACACTTTCCACCAATCCACTTGCTCTCGTGGGAGCCAAGGTTTCATACATAGAAAGCTTGGACTACGAGATCAATGAGAATGATCTGTTCAAGCATGATTGGAGGAGCAGATCGAAAGTTCAGGTGTTACAGTACATATTCTGTAAATGGTCACTGGCTTTCCTTGTTGGACTTCTCACCGGACTTATTGCCACCCTCATCAATCTTGCAATTGAGAACATTGCGGGTTACAAGATTCTTGCGGTTGTTGGATTCATCGAAGAAGATAGGTATTTGGCGGGCTTCTTATATTTCACCGGCATAAATTTCTTTTTGACATTCGTTGCTTCCCTTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGTATACCTGAAATCAAAGCTTACCTTAATGGCGTCGATACTCCAGACATGTATGGTGCCACGACATTGATCGTTAAGATAGTTGGAAGCATTGGAGCTGTGGCTGCAGGTCTAGATTTAGGAAAAGAAGGGCCATTGGTACATATTGGGGCCTGCATAGCTTCCTTACTAGGCCAAGGAGGCACTGAGAAACACCGGATCAAATGGCGATGGCTTCGATATTTCAACAACGATCGAGACCGCCGAGATCTTATCACATGTGGAGCTTCCTCGGGGGTTTGTGCAGCATTCAGGGCACCTGTCGGAGGAGTTCTGTTTTCTCTAGAAGAGGTTGCAACTTGGTGGAGAAGCGCTCTCCTCTGGAGAACCTTTTTCAGCACAGCTGTGGTGGCGGTAGTGCTCAGGGCCTTTATTGAAGTATGCAATTCCGGGAAATGTGGCCTCTTTGGCACAGGAGGGTTGGTCATGTTTGATGTCAGTAGTGTCACAGTGAGATACCATGTAATGGATATCATCCCTGTTGTTATCATTGGCATCCTTGGTGGACTATTGGGAAGCCTCTATAACCATCTTCTTCACAAGGTCCTCAGAGTCTACAGTCTCATCAATCAGAAGGGGAAAATGCATAAACTCTTACTCAGTCTCTCAGTTGCACTCTTCACATCAGTGTGCCAATATTGTATTCCATTCCTATCAACATGCGTCCCCTGTGCTCCGTCACTTCCAGAAGATGTCTGCCCCACAAATGGACGTTCTGGAAATTTTAAACAGTTTAATTGCCCCAGTGGTCACTACAATGAACTTGCTACTTTGTTGCTCACCACTAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCACATGAGTATCATTCATCTTCCCTCCTAATTTTCTTTGTACTCTATTGCATATTAGGACTCATTACTTTTGGGATTGCTGTGCCATCTGGGCTCTTCCTCCCTATAATCCTCATGGGTTCTGGTTATGGCCGTCTTCTTGGCCTCTGGATGGGACCTCACACAAAAATTGACCAGGGCTTGTTTGCTGTTCTGGGTGCAGCCTCCCTCATGGCTGGTTCAATGAGAATGACAGTATCAGTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTGCTACTACCCATCACAATGATTGTTCTCTTGATAGCCAAGACTGTTGGAGACAGTTTTAACCCTAGCATCTATGAAATTATACTACACTTGAAAGGGCTTCCTTTCTTGGACGCAAATCCTGAGCCATGGATGAGAAATCTCACAGTGGGTGAACTTGTTGATGTAAAACCACCAGTGACTACCCTCAATGGAATAGAGAAGGTAGCTCGTATAGTGGAAGTTCTTAAAAACACTACACACAATGGTTTCCCTGTTGTGGATGAACAAGGGGAAACTTCAACAGGAGTGGCCAAGCTTCATGGACTGATCCTAAGAGCACACCTTGTGGGAGCGCTAAAGAAGAAATGGTTCCTGAAGGAAAAAAGGAGGACAGAGGAATGGGAAGTGAGAGAGAAATTTACGTGGGTAGATCTAGCAGACAGAGAAGTTAATATTGAGGAGGTGGCTGTGACGAGGGAGGAAATGGAATTATTTGTTGATCTACATCCTTTCACAAATATGACTCCTTTTACAGTTCTGGAGAGCATATCTGTGGCAAAAGCGATGGTCCTCTTCAGACAGCTAGCACTTCGACATATGCTTGTTTTGCCCAATTATCAAGCACCTTGGCAATCTCCTGTGATTGGGATCTTGACCAGGCAGGATCTACTAGCCCACAACATTCTCACGGTCTTTCCTCACCTGGAGAAAACGTGA 2415 0.4526 MSISMAPKSCSLRIPLILTGVVPMGDDSSNREETVAIHCLEGEAEAEAEAEERDPESNPLNESLLKRNRTLSTNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSKVQVLQYIFCKWSLAFLVGLLTGLIATLINLAIENIAGYKILAVVGFIEEDRYLAGFLYFTGINFFLTFVASLLCVCFAPTAAGPGIPEIKAYLNGVDTPDMYGATTLIVKIVGSIGAVAAGLDLGKEGPLVHIGACIASLLGQGGTEKHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIEVCNSGKCGLFGTGGLVMFDVSSVTVRYHVMDIIPVVIIGILGGLLGSLYNHLLHKVLRVYSLINQKGKMHKLLLSLSVALFTSVCQYCIPFLSTCVPCAPSLPEDVCPTNGRSGNFKQFNCPSGHYNELATLLLTTNDDAVRNIFSTNTPHEYHSSSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGLWMGPHTKIDQGLFAVLGAASLMAGSMRMTVSVCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNLTVGELVDVKPPVTTLNGIEKVARIVEVLKNTTHNGFPVVDEQGETSTGVAKLHGLILRAHLVGALKKKWFLKEKRRTEEWEVREKFTWVDLADREVNIEEVAVTREEMELFVDLHPFTNMTPFTVLESISVAKAMVLFRQLALRHMLVLPNYQAPWQSPVIGILTRQDLLAHNILTVFPHLEKT 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1498 804 FunFam Chloride channel ClC3 110 426 - -
Acco06g1498 804 Gene3D Clc chloride channel 110 611 - -
Acco06g1498 804 SMART cbs_1 631 686 IPR000644 -
Acco06g1498 804 SMART cbs_1 741 794 IPR000644 -
Acco06g1498 804 CDD ClC_6_like 87 609 - -
Acco06g1498 804 Pfam Voltage gated chloride channel 175 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 PRINTS Chloride channel signature 187 204 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 PRINTS Chloride channel signature 508 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 PRINTS Chloride channel signature 540 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 PRINTS Chloride channel signature 596 610 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 PRINTS Chloride channel signature 218 237 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 PRINTS Chloride channel signature 282 301 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 PRINTS Chloride channel signature 558 577 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Acco06g1498 804 SUPERFAMILY CBS-domain pair 613 791 IPR046342 -
Acco06g1498 804 Gene3D - 612 797 IPR046342 -
Acco06g1498 804 Pfam CBS domain 629 686 IPR000644 -
Acco06g1498 804 PRINTS Plant CLC chloride channel signature 303 311 IPR002251 GO:0005247|GO:0006821|GO:0016020
Acco06g1498 804 PRINTS Plant CLC chloride channel signature 317 327 IPR002251 GO:0005247|GO:0006821|GO:0016020
Acco06g1498 804 PRINTS Plant CLC chloride channel signature 460 476 IPR002251 GO:0005247|GO:0006821|GO:0016020
Acco06g1498 804 PRINTS Plant CLC chloride channel signature 335 342 IPR002251 GO:0005247|GO:0006821|GO:0016020
Acco06g1498 804 PRINTS Plant CLC chloride channel signature 92 100 IPR002251 GO:0005247|GO:0006821|GO:0016020
Acco06g1498 804 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 33 795 - -
Acco06g1498 804 SUPERFAMILY Clc chloride channel 96 611 IPR014743 -
Acco06g1498 804 CDD CBS_pair_voltage-gated_CLC_euk_bac 629 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1498 Acco-ChrAcco06 10510538 10514570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1498 44 804 Ion Channels AT3G27170 76.863 0.0 1207