Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1494 ATGGTGAAATACTCGAGAGAGCCTGACAATTCCACCAAGTCTTGCAAAGCCCGAGGTTCAGAACTCAGAGTTCATTTTAAGAACACAAGGGAGACAGCCTTCGCAATCAGGAAGTTGCCCTTGGTAAAGGCTAAAAGGTATTTGGAAGATGTTATTGCTCACAAACAAGCCATTCCCTTTCGACGGTATTGTGGTGGAGTAGGCCGCACTGCACAAGCCAAAAATCGTCATTCAAATGGTCAAGGACGCTGGCCTGTCAAATCAGCAAAGTTTATCCTTGATCTGTTGAAAAATGCTGAAAGTAACGCGGAAGTGAAAGGTCTTGATGTAGATGCACTATACATTTCCCACATTCAGGTAAACCAAGCTCAGAAGCAGAGGCGGCGTACTTACCGTGCTCATGGGAGAATTAACCCATACATGTCATCACCCTGCCACATTGAGCTAATTTTGTCTGAAAAAGAGGAGCCGGTCAAAAAGGAGCCCGAGACACAGCTGGCTCCCAGGACTAAGAGCTCGTAG 522 0.4636 MVKYSREPDNSTKSCKARGSELRVHFKNTRETAFAIRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAPRTKSS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1494 173 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco06g1494 173 Gene3D Ribosomal protein L22/L17 1 173 IPR036394 GO:0003735|GO:0005840|GO:0006412
Acco06g1494 173 FunFam 60S ribosomal protein L17 1 173 - -
Acco06g1494 173 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Acco06g1494 173 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Acco06g1494 173 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco06g1494 173 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Acco06g1494 173 MobiDBLite consensus disorder prediction 153 173 - -
Acco06g1494 173 PANTHER 60S RIBOSOMAL PROTEIN L17 1 172 IPR005721 GO:0003735|GO:0006412|GO:0015934
Acco06g1494 173 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1494 Acco-ChrAcco06 10482249 10485627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1494 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.474 7.43e-116 324