LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g1473	ATGGGGTCAGTGATTGCTTATTATTTATTGTCATATTCATCTCCAGCGGTCAGAGCAGGGGATGAACTGAACTTGACGGCTGCTGAACAACAAGCCCATCAGGATCAGATCATGTATTCCAATTGGGATCCTAGTAGCGGGAAGAGTGGAACAGCGAATGTATTTATCAAGTCCAAAGAATATGGATTTGCGCAGTTTGAAAAAGAAGAATCTGCACAAAATGCGATTGACAAGTTAAATGGCATGCTTTTAAGGTCAATGACAGATGAAGATTTGAAGAAAGTTTTTGGAGGATATGGGACCATTACTGGTGCCGTAATGATGAGAGATGCAGATGGTAAATCAAAGTGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAATTATTTCAGTGGGCGCACCGAAAGTTTCGGCAGAATAGTATCGAACCTTTCAAGGATTTCACATTTGGAAACCCTTGTTGCCTTACAGTGCAGCCAACACTTGATGAGCTACACACCTATACAAATCCAGGCTTCAAATCCACAAACCAATCCAGATTCTTAAAGCCAAACCAGCAGGAAAGTCAAACATCTTATTCTGAATTTGCAGACAGCAGAGATGAAGAGAAGTCCCCAGAAGAAGAATTTACTGTCATCCCTGAGCTGTTCCAAGGTTTTCTCACAATAGGAACTCTTGGTACAGAGACAGTCACCAATGAGCCAGCAACACCGACATTTGCCATGCCTGAAGAAAACACATTTGAGAGAAATACTGACGTGACTGAGAGTGACCTGAAACTGATTAATTATGAGTTAGAGAGGTTTCTTGAGGCTGAAAAAGAAAGGTTCTACGAATCATCGGGAAGAGACAGCCATGTCAGCACTATCACACTTGGCGGAAAGCAAATTGATGGAGCTGAAGATGAAGATCATGGAAACACATCTGTATGTCCACTCCAAGGATATTTACTTGGATCAATTGAACTTCCAGAGGCAGTAGTAGAAGTAAAGAAAGAAAGGGCATCACTTGGGGAGCTGTTTCATAGGACCAGGATAACAAATCAGGGCATTATAGAGACAGAAGAAACTGGAGAAACACAACTCAAGCCAACACATCAGTCTTCCAAGCATATTATGAGCAAACTGTTGAAAAAAGTCCACAATTCTTCAAAAAGCTGGAACGCTCCTGGGAGTGATGCTAATGCTGCTTCAACCAACAAGAAACTCTCAAAGGTTTTACGTATGTTTCACAAAAAAGTACATTCTGAAAGTTCCGTGATGAATGCAAAAATTATAGAGTCTCACAGAGTTAAAGTCAAGAATGTCCTATATGATTGCTTTCATGGATATGATACTGGCGACCCCATAGTCCCAGGCAAAGGCAGAAATTTTTCTTCTGAGTGCAAATCAGAAAAGCGGTCCCAAAACTGTAAGAAAAACCGGGTCCCGCCAAAACTGAATAACGGTGGCTCAAGTGGGAAGAGGGAGTGCTGGATCAAGACAGATGACGAGTGTAAACTTGGTGCTGGAGCTGTAGCAACTGAAGCTACAAGAAAATATGATGACGCATCTATACTAAACGAAAGAGAATCTTCAAGCAAGTATTTCATAATATGA	1608	0.4117	MGSVIAYYLLSYSSPAVRAGDELNLTAAEQQAHQDQIMYSNWDPSSGKSGTANVFIKSKEYGFAQFEKEESAQNAIDKLNGMLLRSMTDEDLKKVFGGYGTITGAVMMRDADGKSKCFGFVNFENADAAAKLFQWAHRKFRQNSIEPFKDFTFGNPCCLTVQPTLDELHTYTNPGFKSTNQSRFLKPNQQESQTSYSEFADSRDEEKSPEEEFTVIPELFQGFLTIGTLGTETVTNEPATPTFAMPEENTFERNTDVTESDLKLINYELERFLEAEKERFYESSGRDSHVSTITLGGKQIDGAEDEDHGNTSVCPLQGYLLGSIELPEAVVEVKKERASLGELFHRTRITNQGIIETEETGETQLKPTHQSSKHIMSKLLKKVHNSSKSWNAPGSDANAASTNKKLSKVLRMFHKKVHSESSVMNAKIIESHRVKVKNVLYDCFHGYDTGDPIVPGKGRNFSSECKSEKRSQNCKKNRVPPKLNNGGSSGKRECWIKTDDECKLGAGAVATEATRKYDDASILNERESSSKYFII	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g1473	535	PANTHER	PROTEIN LAZY 1	131	502	IPR038928	GO:0009630\|GO:2000012
	Acco06g1473	535	SUPERFAMILY	RNA-binding domain, RBD	57	137	IPR035979	GO:0003676
	Acco06g1473	535	MobiDBLite	consensus disorder prediction	179	197	-	-
	Acco06g1473	535	Gene3D	-	46	84	IPR012677	-
	Acco06g1473	535	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	76	146	IPR000504	GO:0003723
	Acco06g1473	535	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	85	143	IPR000504	GO:0003723
	Acco06g1473	535	Gene3D	-	85	150	IPR012677	-
	Acco06g1473	535	MobiDBLite	consensus disorder prediction	179	210	-	-
	Acco06g1473	535	SMART	rrm1_1	81	148	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g1473	Acco-ChrAcco06	10366509	10373917	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g1473	5	131	Eukaryotic Initiation Factors Gene Family	AT1G49760	36.735	2.04e-25	108