Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1436 ATGGAGAGACATATGCTGCACAGAGCTCCCGGCGTCCCTTGGATTGAAGAAGTTGAAGACGCAGCATCCTGGACCAGAACTAACATCGAAGGTGAGTCCAAGGGCCAGGACATTGCTTTGGGAGGTCCATTAACGTCCTTCAAATCCATGCTTGAAGGTGAATGGTACATGGATTCTGCTATCAATCCATCTCATCAAGATCTCCCTGGTCTCCCAGTTCACCAGGCAATCAGAGATATTGGTTTTTGTTCGAATCCAAATGATAATTTCCTGTTGCAGCAGCCTATGGATTCATCTTCTTGTTCACCGTCATTCACTATCGACCCGGCTCAGTCACAGCCATTTTTACTTCCCAAATCGTGCTTCCCTCCTCTCTTCAACTCTGTTTGCAACAATCCTTTTGAGAATAATGGCTTCGATTTGGGCTCTGAAAGTGGATTTCTCGGTCACTTCCAGGGAAATCAAAATCAGACTTCGAGTTCCCATGTTCTGATGGGATTTTCGGGTTTGAATACTCAACCACATATGGGCAATCTCGAGCTTAGTTCTAACACTGAATTCCCAGCGACTCGGTTGTTGCCTGCTGCTGACAATGGGGTCACAATCGGTGGTGGATTTAGTCCAATGGGTTTAGAAGCATACGATGGTTCTGGAAATGCCCTGTTTTCTAACAGGGCTAAAGTTTTAAGACCACTTGATGTTTTCCCTCCAGTTGGTGCTCAACCCACTCTCTTTCAGAAGCGAGCTGCGCTTCGCCAAACATCTAGCGGAGCTGATGAATTGGGAGGTTTGGAGATTTCTCCGTCTGGATTTAATGATTATTCAAACATGGAGAAGAAGAGGAAGTTAGAAGACGGCGAAACCGAAGAAGCCAGTATCGATGCGTCTGGGCTGAATTATGATTCTGATGATCTTAATGAGAATAGTAATAAGGCGGAGGAGAATGGGAATAACTGCGGAAGCAATTCTAATGCAAACAGTACTGTTACAGGTGGAAATCAGAAGGGGAAGAAGAAGGGATTACCTGCAAAAAATCTCATGGCCGAGAGAAGGCGCAGGAAGAAACTAAATGATAGGTTATACATGCTTCGGTCGGTTGTTCCGAAGATAAGTAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGCTGCTTCAGCGGATCAACGATCTTCATAATGAGCTGGAGTCGACCCCACCTGGTTCGCTGCCACCACCTTCTACAAATGTTCATCCTTTGACGCCCACTCTCCCAACACTTCCCTGCAGGGTCAAGGAAGAACTTTGCCCTACCTCTTTGCCGAGCCCCAAGAACCAACCTTCGCGAGTGGAGGTTAGGTTAAGGGAAGGGAGAGCTGTGAATATCCATATGTTCTGTGCCCGTAGACCAGGTCTTCTTCTTACCACCTTGAAGACTTTGGACAACCTTGGATTGGACATTCAGCAGGCCGTTATCAGTTGTTTCAATGGCTTTGCTTTAGATGTGTTCCGAGCTGAGCAATGCAGAGAAGGCCAGGATGTTCCACCCGAGCAAATTAGAGCAGTATTGTTGGAATCAGCAGGTTGCCATGGAATGGTATGA 1596 0.4649 MERHMLHRAPGVPWIEEVEDAASWTRTNIEGESKGQDIALGGPLTSFKSMLEGEWYMDSAINPSHQDLPGLPVHQAIRDIGFCSNPNDNFLLQQPMDSSSCSPSFTIDPAQSQPFLLPKSCFPPLFNSVCNNPFENNGFDLGSESGFLGHFQGNQNQTSSSHVLMGFSGLNTQPHMGNLELSSNTEFPATRLLPAADNGVTIGGGFSPMGLEAYDGSGNALFSNRAKVLRPLDVFPPVGAQPTLFQKRAALRQTSSGADELGGLEISPSGFNDYSNMEKKRKLEDGETEEASIDASGLNYDSDDLNENSNKAEENGNNCGSNSNANSTVTGGNQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPPSTNVHPLTPTLPTLPCRVKEELCPTSLPSPKNQPSRVEVRLREGRAVNIHMFCARRPGLLLTTLKTLDNLGLDIQQAVISCFNGFALDVFRAEQCREGQDVPPEQIRAVLLESAGCHGMV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1436 531 MobiDBLite consensus disorder prediction 280 344 - -
Acco06g1436 531 MobiDBLite consensus disorder prediction 299 334 - -
Acco06g1436 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 410 IPR036638 GO:0046983
Acco06g1436 531 Pfam Helix-loop-helix DNA-binding domain 347 389 IPR011598 GO:0046983
Acco06g1436 531 Coils Coil 383 403 - -
Acco06g1436 531 Gene3D - 333 403 IPR036638 GO:0046983
Acco06g1436 531 FunFam BHLH transcription factor 336 404 - -
Acco06g1436 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
Acco06g1436 531 CDD bHLH_AtAMS_like 343 410 - -
Acco06g1436 531 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 183 527 - -
Acco06g1436 531 SMART finulus 346 395 IPR011598 GO:0046983
Acco06g1436 531 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1436 Acco-ChrAcco06 10048453 10051653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1436 23 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.870 5.09e-149 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco06g1436 HLH 1.6e-09 No_clan