Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1425 ATGTCTCACTCCCAAACACATCCCTATCTTATCGACTCCACTACTACTTCCACCTTCCCAATCCCACAAGTAACTACTACCTCTTCTCCCGCTTTGATTGACACTCAGATCACCTCATCCCACAATTTACCTCAAGGGAATATAACAGAAAGGAAAAAACACTATAGAGGAGTTAGGCAGAGACCGTGGGGGAAATGGGCAGCCGAAATCAGAGACCCAAACAAAGCAGCAAGAGTGTGGCTTGGTACTTTTGACACGGCAGAGGATGCTGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGCAATAAAGCCAAGCTCAATTTCCCTGAACGTGTGGCCAATTTTCAAACTTCATCAGTAGCTCCTCCTCCTCGGACTCCGTCTGAGGTGGTGGCGCCTCTGCCGGAATCTCAACCACCATGGCCGCCTCCTCCGTCAGGCGAGGGGTTTCCAAACCTAATGCAGTATGCCGAGGTGCTTTGTAGTAGGGACGATGATGATCTGCAACGAGCTGCTTCGGGACTTTATAATTATCATCAGAGTGTTAATGAGTCATCATTTCTGTATGATTCTTCTTCATTCTTCTCATCTTCTTCGTTGTCAGCAGTGACTTCGTCTTCTTCCACGGCTGGGTCCGATCAACAAATAATTGGAGATAATCGTGGCTTTTCTGGTTCTTATTATTTTTTTGATAAGGGTACTGATGATTTTGATGGAAGCCACACGAGGTGA 738 0.4648 MSHSQTHPYLIDSTTTSTFPIPQVTTTSSPALIDTQITSSHNLPQGNITERKKHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAAAAYDAAALKFKGNKAKLNFPERVANFQTSSVAPPPRTPSEVVAPLPESQPPWPPPPSGEGFPNLMQYAEVLCSRDDDDLQRAASGLYNYHQSVNESSFLYDSSSFFSSSSLSAVTSSSSTAGSDQQIIGDNRGFSGSYYFFDKGTDDFDGSHTR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1425 245 Gene3D AP2/ERF domain 53 114 IPR036955 GO:0003700|GO:0006355
Acco06g1425 245 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Acco06g1425 245 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Acco06g1425 245 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Acco06g1425 245 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Acco06g1425 245 PANTHER DNA-BINDING DOMAIN 43 193 IPR044808 GO:0003700|GO:0009873
Acco06g1425 245 MobiDBLite consensus disorder prediction 128 145 - -
Acco06g1425 245 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Acco06g1425 245 MobiDBLite consensus disorder prediction 119 145 - -
Acco06g1425 245 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
Acco06g1425 245 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Acco06g1425 245 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1425 Acco-ChrAcco06 9942797 9944163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1425 51 178 AP2-EREBP Transcription Factor Family AT5G13330 53.676 7.36e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco06g1425 AP2 1.8e-15 CL0081