LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g1412	ATGAACCCATTTTCATCGTCGTCATCCAAGGCCAAAAAGAAGCAAACAGCGACAACAAGCACAGCCACAGCAATGGCAACAACAACACAGGAGCAAAAACATGAAACGGCGTGGGGAGGGAGGTACCTGGGTGTTCGGAGGAGGCCGTGGGGACGATACGCGGCGGAGATCCGAGACCCGTCCACCAAAGAGAGGCATTGGCTCGGCACCTTCGACACTGCTGAAGAAGCCGCGTTGGCCTATGACAGGGCAGCTCGGTCCATGCGCGGCTCACGTGCCCGAACCAACTTTGTCTACTCCGATACACCCCCGGGTTCTTCTGTCACCTCCATTATCTCCCCCGACGAACAATCCCACCAGAATCACGACTTCTCGTCTTTCTTCGCCCAAAATTCGCTCACCCAACAATCTTACCCAGATCCCCATCTCTCCGAATGCAATCTCTCCGACAGTTTCATAGCGTTTACGGATAGTAATGCTTGGTCTTCACCTTCATCTGGGGCTTATAATTATCCACAACATCAAGTTGCAGCGACGGAGAGCCATAACCTAACACATTTCCAACAATTGTATGATGATAGCAACACTGAGCTTCCTCCATTGCCGCCAGATATTACCAGCTCCGCGGGATACGAAATGGGAAACGGGTTTTACGGTAACGAATTCGGGCATTCGGAGCAGAGCACCGTGACGGATACAAGCGGGGGATCGTACGCTTACATGGGCTTTGATTCGGTTGATTACGTGCATAGTCCGCTGTTCAGCACAATGCCACCGGTGTCAGATAAGGAGCCGGAGAGCTTTGATTTGGGGAATTCGTCTTATTTCTACTGA	834	0.5192	MNPFSSSSSKAKKKQTATTSTATAMATTTQEQKHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTSIISPDEQSHQNHDFSSFFAQNSLTQQSYPDPHLSECNLSDSFIAFTDSNAWSSPSSGAYNYPQHQVAATESHNLTHFQQLYDDSNTELPPLPPDITSSAGYEMGNGFYGNEFGHSEQSTVTDTSGGSYAYMGFDSVDYVHSPLFSTMPPVSDKEPESFDLGNSSYFY	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g1412	277	Pfam	AP2 domain	42	90	IPR001471	GO:0003700\|GO:0006355
	Acco06g1412	277	PRINTS	Ethylene responsive element binding protein signature	64	80	IPR001471	GO:0003700\|GO:0006355
	Acco06g1412	277	PRINTS	Ethylene responsive element binding protein signature	42	53	IPR001471	GO:0003700\|GO:0006355
	Acco06g1412	277	MobiDBLite	consensus disorder prediction	258	277	-	-
	Acco06g1412	277	CDD	AP2	41	97	IPR001471	GO:0003700\|GO:0006355
	Acco06g1412	277	ProSiteProfiles	AP2/ERF domain profile.	41	98	IPR001471	GO:0003700\|GO:0006355
	Acco06g1412	277	FunFam	Ethylene-responsive transcription factor 2	41	99	-	-
	Acco06g1412	277	SMART	rav1_2	41	104	IPR001471	GO:0003700\|GO:0006355
	Acco06g1412	277	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	17	173	-	-
	Acco06g1412	277	Gene3D	AP2/ERF domain	40	99	IPR036955	GO:0003700\|GO:0006355
	Acco06g1412	277	SUPERFAMILY	DNA-binding domain	41	99	IPR016177	GO:0003677
	Acco06g1412	277	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g1412	Acco-ChrAcco06	9821912	9822745	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g1412	31	269	AP2-EREBP Transcription Factor Family	AT5G13910	45.783	7.47e-57	180

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco06g1412		AP2	1.8e-13	CL0081