Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1401 ATGGATTCCCTTGACACCAATCGGAATCACCCATTACAAAGTTCAGCGCTGGCAACCGACGGTGATGCACCTACTGATGCAGGAGATGATGTCAAATTGAGTTCTAGGGACCAAAGAGAAGCTCTACCAGGTGAGCCGAAGTGTGTTCTATGTGGCCGCTATGGTGAGTACATATGTGATGAAACGGATGATGACGTTTGCAGCTTGGAATGTAAACAGAAACTACTACGCAGAACTCCCTGCTCTTCACTGCCTGCTGTTACTCGTCCATCTAAAATGCTTACTGCAACTGATGAGTGCTTTTATGTTAGAGATAATGATTACGAATCAGGTCCTCGGTCTAGAGATGAGGCTGATATGCTTAGAAAGAAACTTGATATTCATGTGAAGGGTGATGTAGTAGCTCCAATATTATCATTCACTAGTTGTAACCTTCCTGATAAGCTCCTCCACAATATAGAAGCTGCGGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATTCCAGCTGCTTTGACAGGAAAAAGCATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTTTAATTCCAATTGTGTCTCATTGTGCAAGGCATCGCCTTGAACATCCTTCCGCTAAGAAAATGCCATTAGCTATGGTGTTAACACCTACAAGAGAGCTCTGTATTCAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGGCTGGACAGATCTATCGCATTCAGCAAGGAGTAGAACTGATTGTAGGAACTCCAGGAAGGCTGGTTGATCTTTTAACGAAGCATGAGATTGACTTGGATGGTATGATGACGTTTGTTGTGGATGAGGTGGACTGCATGCTGGAAAGGGGTTTCCGAGATCAGGTCATGCAGATATACAAGGCTATGTCCCAGCCCCAGGTCTTGATGTATTCTGCAACAATCTCTCATGAGTTAGAGAAGATGGCAAACTCTCTGGCGAAAGATACTGTGGTTATATCTGTTGGCGAGCCTAATAAACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAGAAGAAGCAGAAGCTGTTTGACATTTTGGTCAGTAAGCAGCATTTTAAGCCACCTGTGGTCGTGTATGTGGGGTCTAGACTTGGGGCAGATCTTCTGGCCAATGCCATTACGGTTACCACTGGGATCAAAGCACTGTCAATTCACGGGGAGAAGCCCATGAAGGAAAGGAGAGAAATTATGAGGTCCTTTTTAGTTGGTGAGGTTCCTGTGGTTGTGGCAACTGGAGTTTTGGGTAGAGGGGTTGATCTATTAGGTGTAAAACAGGTAATTGTGTTCGACATGCCTAATTCAATCAAGGAGTATGTACATCAGATTGGAAGGGCGTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTCTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAGTTGACTGAAGTCTTAAAATCTGCCGGAGCAGCTGTGCCTCGGGAGCTTGTCTGCTCACGATATACTAAGGGATTCTTCTCTGGTGGCAAAGGTCCAAAAAAGAGGAAGAATAGGTCGTGA 1617 0.4471 MDSLDTNRNHPLQSSALATDGDAPTDAGDDVKLSSRDQREALPGEPKCVLCGRYGEYICDETDDDVCSLECKQKLLRRTPCSSLPAVTRPSKMLTATDECFYVRDNDYESGPRSRDEADMLRKKLDIHVKGDVVAPILSFTSCNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKSMLVLADTGSGKSASFLIPIVSHCARHRLEHPSAKKMPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQIYRIQQGVELIVGTPGRLVDLLTKHEIDLDGMMTFVVDEVDCMLERGFRDQVMQIYKAMSQPQVLMYSATISHELEKMANSLAKDTVVISVGEPNKPNKAVKQLAIWVESKQKKQKLFDILVSKQHFKPPVVVYVGSRLGADLLANAITVTTGIKALSIHGEKPMKERREIMRSFLVGEVPVVVATGVLGRGVDLLGVKQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVLVNEENKNVFAELTEVLKSAGAAVPRELVCSRYTKGFFSGGKGPKKRKNRS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1401 538 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 135 514 - -
Acco06g1401 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 345 IPR014001 -
Acco06g1401 538 MobiDBLite consensus disorder prediction 1 20 - -
Acco06g1401 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 494 IPR027417 -
Acco06g1401 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Acco06g1401 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 519 IPR001650 -
Acco06g1401 538 Gene3D - 351 523 IPR027417 -
Acco06g1401 538 Gene3D - 106 349 IPR027417 -
Acco06g1401 538 SMART helicmild6 398 480 IPR001650 -
Acco06g1401 538 CDD SF2_C_DEAD 357 489 - -
Acco06g1401 538 Pfam Helicase conserved C-terminal domain 371 480 IPR001650 -
Acco06g1401 538 Pfam DEAD/DEAH box helicase 162 333 IPR011545 GO:0003676|GO:0005524
Acco06g1401 538 MobiDBLite consensus disorder prediction 1 38 - -
Acco06g1401 538 SMART ultradead3 157 360 IPR014001 -
Acco06g1401 538 Pfam HIT zinc finger 46 72 IPR007529 -
Acco06g1401 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 347 IPR027417 -
Acco06g1401 538 Gene3D - 27 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1401 Acco-ChrAcco06 9742963 9744906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1401 132 512 Eukaryotic Initiation Factors Gene Family AT3G19760 27.979 1.73e-54 187