Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1366 ATGGCAATTGCACGAACTGGCGTCTATGTCGACGACTATTTGGAATACGCGAGTACACTGCCTGCTGAACTTCAAAGGTTGCTTAATACCATCAGAGAGCTCGATGATCGATCCCAATCTATGATAAACCAGACGAGGCAGCAGACAAAGTACTGCTTGGGGATGTCATCACATGGCCATAAGAAGGGTTATCATGGCAGTGGCCATCATTGTAATAACAATAATATGAATGAAGATGATGACATTGCAATTGAGAAAATGCGAAAAGAAATTGAGGCAAATCAAGATAGTGCATTTAGTCTATGTACTGAGAAGGTTTTATTGGCAAGGCAAGCATATGACCTGATAGATAGCCATGTAAAGCGTCTTGAGGAGGATTTGAACAACTTTGCTGAAGATCTAAAGCAAGAGGGGAAAATACCACCAGATGAACCAGCAACTCTTCCCCCGTTGCCTCTAGTACTTAAAAGTGAAAACCGCAGGCTCGGATATGGAACACCTCAATCAAAGAGTTTTAATTACAGGGATAGAGACTGGGATAGAGAGCGTGATAGGGACTTTGAGCTCATGCCTCCACCAGGAAGCCATAAAAAAGATTATACAGCTCCTGTGGATTTTGATCAACCCATTGATCCTAATGAACCCACGTACTGTGTTTGTCATCAGGTGTCTTTTGGTGATATGATTGCTTGTGACAATGAAAATTGCCAAGGAGGCGAATGGTTCCACTATGCTTGTGTTGGCCTTACACCAGAGACAAGATTCAAGGGAAAGTGGTATTGCCCAACCTGCAAATTGCTTCCACAATGTCAATGA 816 0.4277 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDDRSQSMINQTRQQTKYCLGMSSHGHKKGYHGSGHHCNNNNMNEDDDIAIEKMRKEIEANQDSAFSLCTEKVLLARQAYDLIDSHVKRLEEDLNNFAEDLKQEGKIPPDEPATLPPLPLVLKSENRRLGYGTPQSKSFNYRDRDWDRERDRDFELMPPPGSHKKDYTAPVDFDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCKLLPQCQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1366 271 Pfam PHD-finger 217 265 IPR019787 -
Acco06g1366 271 SMART ING_2 9 130 IPR024610 -
Acco06g1366 271 Coils Coil 120 140 - -
Acco06g1366 271 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Acco06g1366 271 Coils Coil 24 44 - -
Acco06g1366 271 Gene3D - 5 128 - -
Acco06g1366 271 PANTHER INHIBITOR OF GROWTH PROTEIN 2 265 IPR028651 -
Acco06g1366 271 SUPERFAMILY FYVE/PHD zinc finger 199 265 IPR011011 -
Acco06g1366 271 CDD ING_plant 17 127 - -
Acco06g1366 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 266 IPR013083 -
Acco06g1366 271 SMART PHD_3 217 265 IPR001965 -
Acco06g1366 271 FunFam PHD finger protein ING 209 267 - -
Acco06g1366 271 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Acco06g1366 271 CDD PHD_ING 217 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1366 Acco-ChrAcco06 9481929 9485231 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco06g1366 ING 2.4e-18 No_clan