LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco06g1361	ATGATGAAAGACTTTCATTTTGGTGTTGATGTAGAGCCTTCCTCCATTTCTGCCTCCGATCATCTTGTTTTTGCAGCTAATGGAGTCGATCCGTTAGTATTACTTAAGATTATTGAAATTTTCAGAGCTACTGAAGTGGGCTATGATTTGAATGGGGAGAGGATGCCAGAGTTGAGAAGTGGAGCTAGGAGATCAAAGCGGCTTGGTGATCTTCAGCCTGCCCCACAACCCATTGAACAGAACTGCGTACAAACTGCTCCAAACAAGACCAGAAGGAGAGTTGGAGGAGGAAGAGGAAGAGGTGGGAATGCCACAGCTGTAACTAACGGAACTTCACCAGCAGTACCCACAAGACGAACTGCAACTGGTAGGGGCCGAGGAGGTCGATTGGTTGATCTTATTCCTGAACCTGTTGCACTTGGTGCCCCTGAACCTGTGCTTAATCGTGAAGAGGTAGCAGCCAATAATAACAATTTAATGGCGGGTGGAAGTGCGGACAAGGTGGTTGGAGCTGAAGAGGAGACATGCGCAACCCCTGTTCCTGAAACGGTACAGGTTGGTAGTTCTCCTTTATATAAGATAGAGACAAAGTTGGGTAAGGGTGGTTTTGGTCAAGTCTATGTTGGCAGAAGGGTAAGCGGTGGTTCTGATGGGACAGGTCCTGATGCAATTGAGGTTGCGCTAAAGTTTGAACACAGAAATAGTAAGGGTTGCAATTATGGGCCTCCTTACGAGTGGCAAGTCTACAATACTCTGAATGGCTGTTATGGCATTCCCTGGGTTCATTACAAGGGTCGCCAAGGAGATTTCTATATACTGGTCATGGACATGCTTGGTCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAGTCGATGTCACCAAATATGGTTGCATGCATTGCGGTGGAGGCAATATCAATTCTTGAGAAGCTCCATATGAAAGGGTTTGTGCATGGAGATGTTAAACCTGAGAACTTCTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGTTATATCTTATTGATCTTGGTTTGGCATCTAAATGGAAGGACACATCTGGTCAACATGTTGAATATGATCAGAGGCCTGACGTTTTTAGGGGGACCATAAGATATGCCAGTGTACATGCACATTTAGGTAGGACTGGAAGTAGAAGGGACGATCTTGAGTCCCTGGCATATACATTAATATTTCTTATAAAAGGGAGGTTACCTTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAGATGGGCACTTCTCCAGAGTTGATGTGCTGCTTTTGTCCTGCTCCATTCAAGCAGTTCCTTGAAACCGTTACTAACATGAGATTTGATGAGGAGCCCAACTATTCCAAACTTATATCATTATTTGATAGCTTGATTGAACCATCTTCTCAGTTGAGACCAATCAGAATTGATGGAGCTTTAAAGGTTGGACAAAAGAGGGCTAGAATGCTTTTAAATCATGAAGATGATGAACAGCCAAAGAAGAAAGTGCGATTGGGGAATCCTGCTACTCAGTGGATATCAGTGTATAATGCACGGCGTCCCATGAAGCAGAGATATCACTATAATGTATCAGACAGTAGGCTTCCTCAGCATGTAGATAAGGGTAATGAGGATGGATTATATATCAGCTGTGTTGCCTCCTCATCAAACCTTTGGGCCCTAACCATCGATGCGGGAACGGGTTTCTCCTCTCAGGTCTATGAGTTGTCGCCAGTCTTCCTGCACAAGGATTGGATTATGGAACAATGGGAGAAAAATTTCTATATTAGTTCTATAGCTGGTGCAACAAATGGGAGTTCCTTGGTTGTTATGTCCAAAGGAACTACGTACACCCAGCAGTCCTACAAGGTAAGTGAATCATTTCCTTTCAAATGGATCAATAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCTTGACCACTGCTGGCAGTCGATGGGGTGTTGTTATGTCCAGGAATGCAGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTATACCCAAGTGAAGGTATTCATCGGCGATGGGAGAGTGGTTTCCGGATAACATCTATGGCTGCTACCGCTGATCAGGCTGCCTTCATTCTTAGCATACCAAAACGCAAATTGCTTGATGAAACTCAAGAAACTCTCCGTACTTCTGCCTTCCCTAGCACCCATGTGAAGGAAAAATGGACAAAGAATCTCTATATAGCCTCAATATGTTATGGGCGGACTGTTTGCTAG	2259	0.4418	MMKDFHFGVDVEPSSISASDHLVFAANGVDPLVLLKIIEIFRATEVGYDLNGERMPELRSGARRSKRLGDLQPAPQPIEQNCVQTAPNKTRRRVGGGRGRGGNATAVTNGTSPAVPTRRTATGRGRGGRLVDLIPEPVALGAPEPVLNREEVAANNNNLMAGGSADKVVGAEEETCATPVPETVQVGSSPLYKIETKLGKGGFGQVYVGRRVSGGSDGTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPNMVACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASKWKDTSGQHVEYDQRPDVFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMGTSPELMCCFCPAPFKQFLETVTNMRFDEEPNYSKLISLFDSLIEPSSQLRPIRIDGALKVGQKRARMLLNHEDDEQPKKKVRLGNPATQWISVYNARRPMKQRYHYNVSDSRLPQHVDKGNEDGLYISCVASSSNLWALTIDAGTGFSSQVYELSPVFLHKDWIMEQWEKNFYISSIAGATNGSSLVVMSKGTTYTQQSYKVSESFPFKWINKKWKEGFHVTSLTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGFRITSMAATADQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWTKNLYIASICYGRTVC	752

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco06g1361	752	ProSiteProfiles	Protein kinase domain profile.	192	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1361	752	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	317	329	IPR008271	GO:0004672\|GO:0006468
	Acco06g1361	752	MobiDBLite	consensus disorder prediction	89	129	-	-
	Acco06g1361	752	CDD	STKc_CK1	192	465	-	-
	Acco06g1361	752	PANTHER	CASEIN KINASE-RELATED	193	714	-	-
	Acco06g1361	752	Pfam	Protein kinase domain	192	431	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1361	752	SUPERFAMILY	Protein kinase-like (PK-like)	192	478	IPR011009	-
	Acco06g1361	752	FunFam	Casein kinase 1-like protein	164	511	-	-
	Acco06g1361	752	ProSitePatterns	Protein kinases ATP-binding region signature.	198	229	IPR017441	GO:0005524
	Acco06g1361	752	Gene3D	Transferase(Phosphotransferase) domain 1	160	519	-	-
	Acco06g1361	752	SMART	serkin_6	192	494	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco06g1361	752	MobiDBLite	consensus disorder prediction	104	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco06g1361	Acco-ChrAcco06	9441148	9450123	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco06g1361	309	465	MAP Kinase Kinase Kinase	AT5G50180	26.061	6.00e-08	53.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Acco06g1361		Pkinase	3.9e-16	CL0016