Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1348 ATGGAAATTCACTTCCAGCAACCAAAGCAGTTTCAGAAAGCATCAGCTGTTCCAATCAGAAGAGGAGGCAAGTTCAAAGGAAGGAACAAGAACAATGGCACAAACAAATTTGTTGGGGTGAGACAAAGACCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACTGCAGAAGAAGCAGCAAGGGCTTATGATGAAGCTGCCTGCCTCCTTCGAGGATCCAACGCTCGCACCAACTTCATCACTCGTGTCTCCATGGATTCTCCTCTTGCTTCTCGTATCCGAAATCTGCTTAACAACAGAAAAGGAACCAAAGAACAAGATGTTGATGCTTCTTCCTCAAGAGACAACCCTACTAGCTCTACCAGTACTAGGAGCTCAGACTCAAGCAATGGTGAAAAAAATGATAGTGCTCTTTCTAGTGGGAAAATTCAGAACACAGAACTATTTGCTGATGGATATAGACCCGGTTTGAGCAGTTGCAGGGAGGGGTTTGATTTAGGTTCCCAGTCAAATATTTCATGGGGCTTTGGACCTTTCATTGATCGTTTTCCTTTTGCTCAAGTATTGGAAGTGCCAAAATCTGAAGCTGTTGCTGACACATTTGAGTTAGAAATTTCAGAATTTGAGAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTCCATGAGTACATGGAAACAGTCCGGGACTCTAATGAAGAAGCTCTTTGGGATCTTCCGCCCTTATGAAAGGAAGTTGCATTAGCTATTTGTGATGTGAGTGCTTTGTTTTTCACCTGTCTTATCTGTATCCAAGATCTTTGGAGTTCCCTCAGAATATTTGTCTGTGAAAAAAGCCAAAAGAGTCACGATCCTTACTCAAAAGGTGTGCTTCCAGATCTTCTGGGATTTAGGTGGTTCAACGTCGGATCTAACATTGGAAATCACCAACAAGATGCAGAACGTGATATGAGTGGAAACCATGATGCACCTTACCTGCACCAACACAACATGCCTGTTGAAACAATTGACCATGCTCTTGAAACCATCGAGGCCAATGGCCTGCAGAATGTGCTTGCTCTTCGTGGTGATCGCCCGACATGGTCAGGACAAGTTTGTTAG 1158 0.4344 MEIHFQQPKQFQKASAVPIRRGGKFKGRNKNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNARTNFITRVSMDSPLASRIRNLLNNRKGTKEQDVDASSSRDNPTSSTSTRSSDSSNGEKNDSALSSGKIQNTELFADGYRPGLSSCREGFDLGSQSNISWGFGPFIDRFPFAQVLEVPKSEAVADTFELEISEFERMKVERQISASLYAINGVHEYMETVRDSNEEALWDLPPLXKEVALAICDVSALFFTCLICIQDLWSSLRIFVCEKSQKSHDPYSKGVLPDLLGFRWFNVGSNIGNHQQDAERDMSGNHDAPYLHQHNMPVETIDHALETIEANGLQNVLALRGDRPTWSGQVC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1348 385 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Acco06g1348 385 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Acco06g1348 385 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Acco06g1348 385 Pfam Methylenetetrahydrofolate reductase 348 379 IPR003171 GO:0004489|GO:0006555
Acco06g1348 385 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Acco06g1348 385 MobiDBLite consensus disorder prediction 107 154 - -
Acco06g1348 385 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 231 - -
Acco06g1348 385 MobiDBLite consensus disorder prediction 125 154 - -
Acco06g1348 385 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Acco06g1348 385 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Acco06g1348 385 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Acco06g1348 385 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Acco06g1348 385 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1348 Acco-ChrAcco06 9373649 9377162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1348 24 263 AP2-EREBP Transcription Factor Family AT5G19790 40.637 2.92e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco06g1348 AP2 1e-13 CL0081