Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1326 ATGGCTGACCCTCCGCGTCATCCTTCTTCCGCCGCCTCTTCCACCCCTCCCTGCGGTGCCTGCAAGTTCCTCCGCAGGAAATGCATTGCTGGCTGCATCTTTGCTCCTCACTTTAGCTCCGATCAGGGCTCTGCCCGCTTCGCCGCCGTCCACAAGGTCTTTGGCGCTAGCAATGTCTCTAAGCTCTTGCTTCATATTCCCGTCAACCGCCGCCGTGAAGCCGTCGTTACCATATCCTATGAGGCTCAAGCTCGTTTGTCCGATCCTGTTTATGGCTGTGTTGCCACTATCATGTCTTTGCAACAACAGGTGGCATCTCTGCAAGCAGAGCTAGGGATGGTTCAAAGTCAGCTGATGAACAGTAGGTATGCATTCGCAAGTGCAGTGCAGCCGCAACCAAACATGAACATAGGACTCCAACCAGCGTACTCCAACAACAACAATTCATGTGCTTCGACCAATCTCATGAACATGAGCAGCAGCTTCAGCCCTTCTGGTTTTGACCTAGCAATGGAGGCACCACCTTCTCCCCACAGCTTGGACCCTACTCTTCAATTCTCTCACTTATCCCAGGACGACGAAGACGATGAACAAGATAGCAGGATTCCCCATGTTTTCAACCATGACATCCTTCACCCTTGA 642 0.5234 MADPPRHPSSAASSTPPCGACKFLRRKCIAGCIFAPHFSSDQGSARFAAVHKVFGASNVSKLLLHIPVNRRREAVVTISYEAQARLSDPVYGCVATIMSLQQQVASLQAELGMVQSQLMNSRYAFASAVQPQPNMNIGLQPAYSNNNNSCASTNLMNMSSSFSPSGFDLAMEAPPSPHSLDPTLQFSHLSQDDEDDEQDSRIPHVFNHDILHP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1326 213 Coils Coil 97 117 - -
Acco06g1326 213 MobiDBLite consensus disorder prediction 166 185 - -
Acco06g1326 213 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Acco06g1326 213 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Acco06g1326 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1326 Acco-ChrAcco06 9188360 9189643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1326 17 182 AS2 family AT3G03760 62.921 8.44e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco06g1326 LOB 3.1e-37 No_clan