Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1324 ATGGGGCTATTTCTTTTTCCGTTCTTCGTCTTGATCAATTTGTCGGCATTTGCAGCTGGCAATGACGAAACCGCGCTCAGAGGAATTGATCTGGAAAGCCCAGTTTTGGATATCCACGTATTGCCACTTTCTGGAAAAACATATACTCATGGTGCTAAGGACATATTCAGATGTGAACGTGTTCGTGTATATGGACTCTCAAGATTGAAACTCTGGAGTTATGCGAGTTCATTCCGCATTACTTTGGCTCCCTCAGCTGAAATTCCTGAAAAGTTCCATGACAAGATCCACGTCTGTTTCCACAGGAATAATTCACTAGGATGGTGCCAATGTGAAAAGGCCGAATTTAGAAGTGTCCAGAAGGGGATCTGGAGTGCTGTTATGTCTCCATATGAAAAAAGATATATTGATGTGAGATTCACCGATGAAATACCAGGTTCTGTTGTAGCCGCTCTTGAAGAAGATTTTCAGCAATGGCGACTTGTGTGTCTTGCAGTGGGATTCATACTATTGTTGTTGGCTCCCATTATTAGCAGTTGGGTTCCATTTTATTACAGCAGTTCAATGGCTATAGGAATCTTTCTTGTTATTATAATCCTTCTTTTCCAGGGCATGAAATTGTTGCCAACTGGAAGGAAAAATATCTTTTACCTAGCCATATCTGGATCAGTGCTTGGAGCTGGGTCCTTCCTTGTGCACCACTTCTCTGTCTTCATTAATTCAATTCTTCAGAGTTTTGGGTTGAGTGAAGAGATGCATAATCCAGTTGCAGTTTTTGTAATAGTGGGGATCATCTTGGCTGGAGCTGCATTAGGCTATTGGATTGTTAGGAGATTTGTTATCTCAAAAGATGGCGGCGTGGACTCTAGTGTTGCACAATTTGTGAAATGGGCAATGCGCATCCTCGGTGCCACATTTATTTTGCAGAGCACTCTTGATCCTCCTCTGGCAATTGTTGCGTTAGGTTTTTGCGGAGCTTTCTGCAGACTTATATCTTCTATAAGGCATCTTTTTGGTTGGTATGAAACTTCAGGGAAGGATATTTATACATCATGGCAAGCTGGAAAGGTGATTAGAGGGCGTGGTCATGCTGAATTCTTGAGCAAGACAACCCCAAACGGGAAATTGTGGAATAGCCCTAAAATTCAGTCTGCATGGTTGAATTCTCCTGTAAAAGGAATAGTATCACCATCTTATAGCAATGGGATGTCGTCACCCCCATCTTCAGGAGCGCGAGTAGGAAGGGATTATTATTCAACTTTCCACAAGACAGGCAACAGAAAGAAGTTCACAAAGAAAGAGTGGGATAATTTCACACGGGAATCCACTAAACAAGCCCTATCCGAATGGGCATCATCTCCAGAATTTACTGAGTGGATTGTGGAGCATGCAGACCGGATACAGCTCCTGCCAAGCGAAGGTTCAGATGGAACAGAGGAAAGTGCATCGGATTCCTCTGACGTAGGAAGTGAAAATGGATATCGAATTTTTAGTTTTTCGGACAAGAAAACTGCCATCTTCATTAATTCCACAGATCCTGTTCAAGCTAGGTCGGCTATTCTCTCTATTGTGGTGAAACCTCAAACGCCAGCAATCTCCGGGAAGAACGTGATGCCCCCGCCGAACCGGAGCATTTTGGTCTCTCCCTCTAGCTCTCGGTCGGTGACGGAGACCGTGAATGGTTCTCACAACTTCGTAATTAGAGGCTACTCTCTTGCCAAAGGGATCGGCGTCGGCAAGCACTTAGCCAGCGAGAATTTCACGGTCGGTGGGTACCAGTGGGCTATATATTTCTATCCCGATGGCAAGAATCCCGAAGACAATTCTGCTTATGTTTCGGTCTTTATTGCGCTTGCGAGCGAGGGTACTGATGTGCGAGCACTGTTCGAGCTGACTTTGGTGGACCAAAGCGGAAATGGAAAGCACAAAGTTCATAGCCACTTCGATCGCTCGCTTGAGAGCGGGCCCTATACGCTCAAGTACAGAGGGAGCATGTGGGGCTATAAACGGTTTTTCAAACGAGCTCAGCTTGAGGCATCTACCTTCCTCAAAGATGACTGCTTGAAGATAAATTGCACTGTTGGTGTTGTAGTCTCGTCTATAGATTGCTCAAAATTAAACAGCATACAGGTTCCTGAATCTGATATTGGATCACATCTTGGCACGCTATTAGACAATGAGGAAGAAGCAGATGTCATTTTCTCTGTTTCTGGGGAAAAGTTTCGTGCACATAAGCTTATATTGGCTGCTCGGTCTACTGTATTTGAGAGTGAACTTTTCAACGGGATGGATGATGATAGTAAAGAGATAGTTGTTACTGACATGGAACCAAAGGTTTTCAAGGCATTGCTTCACTTTATTTATAAAGACTCACTTATAGACGATGAAGATCTCTTTATGTCACAATCATCAGTCTTGCCATTAGTGTCTGATACATTTGCTGCAAAATTGTTAGCTGCTGCAGAAAAGTATGATTTGCCAAGACTCAAACTAATGTGCGAGTCTGTACTTTGCAAAGACATATCTGTAGATTCTGTTTCTTATATGCTGGCCCTTGCTGATCATTATCATACAACAGAGCTGAAGTCCGTTTGTCTAAAATTTTCAGCTGAAAACCTAGTTGCTGTGATGCAATCTGATGGTTTCGAGTACCTTAAGGAGAACTGTCCATTGCTACAATCAGAACTGCTAAAGACAGTAGCAGGGTGCGAGGAAGAATTTAGCGGAGAAGGAAAATGCCGAAGTGTGTGGGCTCAATTCTCGGATGGCGCTGATACAAATGATAAAAGTGTGAGACAACAAACCTGGGAAAATGATGTTGAAAGAAATCAAGGTCTATGGGTTCCGCTTTCTGATGGTGTTAACAATAATGGTAGGAGTCCAGGGCAAGAAACTTGA 2898 0.4337 MGLFLFPFFVLINLSAFAAGNDETALRGIDLESPVLDIHVLPLSGKTYTHGAKDIFRCERVRVYGLSRLKLWSYASSFRITLAPSAEIPEKFHDKIHVCFHRNNSLGWCQCEKAEFRSVQKGIWSAVMSPYEKRYIDVRFTDEIPGSVVAALEEDFQQWRLVCLAVGFILLLLAPIISSWVPFYYSSSMAIGIFLVIIILLFQGMKLLPTGRKNIFYLAISGSVLGAGSFLVHHFSVFINSILQSFGLSEEMHNPVAVFVIVGIILAGAALGYWIVRRFVISKDGGVDSSVAQFVKWAMRILGATFILQSTLDPPLAIVALGFCGAFCRLISSIRHLFGWYETSGKDIYTSWQAGKVIRGRGHAEFLSKTTPNGKLWNSPKIQSAWLNSPVKGIVSPSYSNGMSSPPSSGARVGRDYYSTFHKTGNRKKFTKKEWDNFTRESTKQALSEWASSPEFTEWIVEHADRIQLLPSEGSDGTEESASDSSDVGSENGYRIFSFSDKKTAIFINSTDPVQARSAILSIVVKPQTPAISGKNVMPPPNRSILVSPSSSRSVTETVNGSHNFVIRGYSLAKGIGVGKHLASENFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNSIQVPESDIGSHLGTLLDNEEEADVIFSVSGEKFRAHKLILAARSTVFESELFNGMDDDSKEIVVTDMEPKVFKALLHFIYKDSLIDDEDLFMSQSSVLPLVSDTFAAKLLAAAEKYDLPRLKLMCESVLCKDISVDSVSYMLALADHYHTTELKSVCLKFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGADTNDKSVRQQTWENDVERNQGLWVPLSDGVNNNGRSPGQET 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1324 965 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 559 698 IPR008974 GO:0005515
Acco06g1324 965 SUPERFAMILY TRAF domain-like 557 696 - -
Acco06g1324 965 CDD BACK_AtBPM-like 838 899 IPR034090 -
Acco06g1324 965 Gene3D - 840 914 - -
Acco06g1324 965 SMART math_3 565 677 IPR002083 GO:0005515
Acco06g1324 965 ProSiteProfiles BTB domain profile. 730 796 IPR000210 GO:0005515
Acco06g1324 965 ProSiteProfiles MATH/TRAF domain profile. 560 694 IPR002083 GO:0005515
Acco06g1324 965 MobiDBLite consensus disorder prediction 471 490 - -
Acco06g1324 965 Gene3D Potassium Channel Kv1.1; Chain A 706 835 IPR011333 -
Acco06g1324 965 CDD BTB_POZ_BPM_plant 716 838 - -
Acco06g1324 965 SUPERFAMILY POZ domain 709 839 IPR011333 -
Acco06g1324 965 SMART BTB_4 730 841 IPR000210 GO:0005515
Acco06g1324 965 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 4 473 - -
Acco06g1324 965 Pfam BTB/POZ domain 722 839 IPR000210 GO:0005515
Acco06g1324 965 Pfam NEMP family 151 424 IPR019358 -
Acco06g1324 965 FunFam BTB/POZ and MATH domain-containing protein 4 559 698 - -
Acco06g1324 965 FunFam BTB-POZ and math domain 1 706 835 - -
Acco06g1324 965 MobiDBLite consensus disorder prediction 474 490 - -
Acco06g1324 965 CDD MATH 561 694 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1324 Acco-ChrAcco06 9160307 9176389 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco06g1324 NEMP 9.9e-60 No_clan