Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1297 ATGGGAAGACCTCCTTGCTGTGACAAAGTTGGGATCAAGAAGGGACCATGGACTCCTGAGGAGGATATCATCCTTGTTTCTTACATCCAAGAGCATGGCCCTGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTGAGATGGACAAACTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACACCTCATGAGGAAGGAATGATAATTCATTTGCAGGCTCTTCTGGGAAACAAATGGGCAGCCATAGCTTCGTACCTGCCTCAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAGGAAATTTCAAGCAGCCTTGGACCCCCACCTTGCATCACCAGACCCAACCACCTCTGCTCAGCTTGTATCCAAGAGCTTTCATGACAAAACGAATTTAGATATGAGTAACAACAACACTTCATCTCTTAGGCTTAGCCAGTCCCAGTCCCAGTCCCAGTCCCAGTCCTCCTCCTCCACCACCTACGCCTCAAGCACTGAGAACATCTCACGCCTCTTACAAGGTTGGATGAGATCATCCCCAAAGCCAGACAACAACAATAGTAATCTTCTCCAAGTAACCAAAGACAAGGAGCTTCATCAAAACGACGACAACAACGTTAACAGCTTTGAAAACAGTAATAAGACAATGATGGTGAAGTCTGCATCACTACCTGCTGCTTTAAATTTTGTGTCCTTTCATCATCATGCAAAAGATGAGCAAGAGGGTGGTGGAGATTTGGTGTCCCATGAAGAGTTTGATTCTATCCTGTCGTTTGAGAATTTAAACAATGCTTCTGCTTGGGACAAGTCAACTTGTGATTCTGTTCTTGACAAGAGTTCTGATGAAGCTGCTGCAGCTGAGAAGGTTCATGATACTAATAAGCAGAATGGTGCTCCTCCATTGTCGTTTCTTGAGAAGTGGCTGTTTGAGGAAAATGTGGGCCATGAGGAGATGATGGAACTTTCCCCTATGTTCTAA 1029 0.4461 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLRKFQAALDPHLASPDPTTSAQLVSKSFHDKTNLDMSNNNTSSLRLSQSQSQSQSQSSSSTTYASSTENISRLLQGWMRSSPKPDNNNSNLLQVTKDKELHQNDDNNVNSFENSNKTMMVKSASLPAALNFVSFHHHAKDEQEGGGDLVSHEEFDSILSFENLNNASAWDKSTCDSVLDKSSDEAAAAEKVHDTNKQNGAPPLSFLEKWLFEENVGHEEMMELSPMF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1297 342 CDD SANT 69 112 IPR001005 -
Acco06g1297 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Acco06g1297 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Acco06g1297 342 Gene3D - 13 66 - -
Acco06g1297 342 CDD SANT 16 61 IPR001005 -
Acco06g1297 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Acco06g1297 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco06g1297 342 FunFam Transcription factor MYB60 68 139 - -
Acco06g1297 342 Gene3D - 68 184 - -
Acco06g1297 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco06g1297 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco06g1297 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco06g1297 342 SMART sant 66 114 IPR001005 -
Acco06g1297 342 SMART sant 13 63 IPR001005 -
Acco06g1297 342 MobiDBLite consensus disorder prediction 146 181 - -
Acco06g1297 342 FunFam MYB-related transcription factor 13 66 - -
Acco06g1297 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1297 Acco-ChrAcco06 8938761 8940159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1297 1 119 MYB Transcription Factor Family AT5G62470 89.076 2.96e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco06g1297 Myb_DNA-binding 1.8e-15 CL0123