Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1296 ATGGCAAGCAGAAAGGAAGAAGAAAGAAACGAGAAGATTATTAGAGGACTTATGAAGCTTCCGCCTAACCGAAGATGTATAAACTGCAATAGTATGGGTCCTCAATATGTCTGTACTACTTTTTGGACCTTCGTTTGCATGACATGCAGTGGGATACATCGTGAGTTTACTCATCGAGTTAAGTCTGTATCTATGGCAAAATTCACTTCTCAGGAGGTAGAAGCTCTTCAAAATGGTGGCAACCAGCGTGCAAGGGACATATATTTGAAAGATTGGGATTTCCAAAGGCAGCGGATGCCAGATAGCAGCAATGCTGACAAAATAAGGGAGTTTATAAAGAATGTGTACATTGATAGAAGATATGCTGGAGCAAGGTCCTCTGACAAACCTCCAAGAGATACACAGAGCCCTAGAATCCTTGGAGATGACACTAGGCGTGCTAGCTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGGTATGGAAGACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCAGACAAAGGTCGCTATGAAGGGAAAATGTCTAGTATTATGTATAGTCCTGGGCGCTTCAGTGACCACGCATCTGAGGATGGCTTTGCTAATGAGGGATCTGCTCCAAGAATTTCAGACTATTCTATGTCTAGTGCTGGTGAACAATTCAAATCTGCTGTGCACTCTCCTAAGTTTTTTAGGGACATGCGAAGCAGTCCATTCCATCAGGGTTCTAGTGCTGGTTCAAGTGAAGATGTATTTTCTCCATCACGGTTTACATCTCTGGAAACACTTGTCAAGGGTGATTCAGATGGACATAATCCACAGAGAACCACACCACAGGGTTCAACTGCCTGCAATCCATCATCCCATAGATCTTACAGTTCTGGTGGTCTAGATTTATTTTCGGAGCCTGTCCAAGCTTCTGGATCCAATCAAGATAAGTTGTCTGCCATACCATTTTCACAACAAACACGTCCACCAAGATCAGTTAGCTTGGATCTTTCAAAGGCGGCAGTGGCATCTGGGCCGCTGCCCTCCTTAATGCCGCCTATTGATCTTTTTGAGTTTCCAGCATCATCTCAGGCTCCATCAGTGAATTTGTTTCAACCATCTATTTTGTCGTCAGCTCCTTTGTCAAATGAAAATCAACCTTCACAAACATCCCAGCCCTCACCTATCGACTTCTTTGCAGATGTTTCTAAGCAGCAGCCTGCTGCTCCATCAGATGAGAAGTCACCAGAGTTCTTTGTCCCTAAAAATGATGGGTGGGCAACATTTGATATCCCTCAGCAATCGGCATCTCCTGCACGAGTTGAAATCCCAGCAGGAGTTCCTTCAACTGATAAGTCTTTGCTGGAATTATTTGATCCATTTTCCACGGAAAATGCCAGCCAGCAGTGGCCATCTTTTGACACTTCTGGTGTTCTTGAACCTTCAATCACTTCTTATGCATGGCATGGCAGTGTTCAGAATGGAGAACAAGCTTCGGCTGCTGCTGAAAATGCTCAACCATGGAATGCATTTGAAAATTCTGGTTCCCACCTTCCTGTTGATGCTGTTAATCAAGAGTTGCAATTGCATAATCCTCCATCAAGTGATCAATTTTTAAGCTCAAAAGTTTCTGAGGATTCCAAAGGTGGGGTGCAAGACTTTGCCCCTATTGGTGCATTCAATGTTAATATTCAATCAGATGTTAGTGGTTTACCATTTCCTCTGACCATGCTTCCTCTGATGGAAGAGACTCAGCGCAGTGCAACCAACCAGAAATCAACTAATCCATTTGATCTTCCCTATGAATCTGATGTAGAGCACACCAATATGTTCCTTGATCTGAGCTCATTGCAAACTGCTCTGCCAGATTCCCAGTTGTCTCCTCCATACCATGGTGGTAATGGTATAGTGGAACCATGGCTCCCGCAAAGTGTGACCCCATATATTTCTTCAGCGGGACAAGGCGGGCTAACGTTCATGGCTGCACAGCCACCGAGTTCTCAAATACCGAACATCCAGACGCAGGGACCAGTTGCATCTTTTGGGGGCAATCCTTTTGCTTAG 2079 0.4435 MASRKEEERNEKIIRGLMKLPPNRRCINCNSMGPQYVCTTFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVEALQNGGNQRARDIYLKDWDFQRQRMPDSSNADKIREFIKNVYIDRRYAGARSSDKPPRDTQSPRILGDDTRRASSYHSYSQSPPYDYQYEDRRYGRQAAALTRKPGSDKGRYEGKMSSIMYSPGRFSDHASEDGFANEGSAPRISDYSMSSAGEQFKSAVHSPKFFRDMRSSPFHQGSSAGSSEDVFSPSRFTSLETLVKGDSDGHNPQRTTPQGSTACNPSSHRSYSSGGLDLFSEPVQASGSNQDKLSAIPFSQQTRPPRSVSLDLSKAAVASGPLPSLMPPIDLFEFPASSQAPSVNLFQPSILSSAPLSNENQPSQTSQPSPIDFFADVSKQQPAAPSDEKSPEFFVPKNDGWATFDIPQQSASPARVEIPAGVPSTDKSLLELFDPFSTENASQQWPSFDTSGVLEPSITSYAWHGSVQNGEQASAAAENAQPWNAFENSGSHLPVDAVNQELQLHNPPSSDQFLSSKVSEDSKGGVQDFAPIGAFNVNIQSDVSGLPFPLTMLPLMEETQRSATNQKSTNPFDLPYESDVEHTNMFLDLSSLQTALPDSQLSPPYHGGNGIVEPWLPQSVTPYISSAGQGGLTFMAAQPPSSQIPNIQTQGPVASFGGNPFA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1296 692 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Acco06g1296 692 MobiDBLite consensus disorder prediction 272 319 - -
Acco06g1296 692 MobiDBLite consensus disorder prediction 278 319 - -
Acco06g1296 692 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Acco06g1296 692 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Acco06g1296 692 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Acco06g1296 692 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Acco06g1296 692 CDD ArfGap_AGFG 11 121 - -
Acco06g1296 692 MobiDBLite consensus disorder prediction 668 685 - -
Acco06g1296 692 MobiDBLite consensus disorder prediction 122 164 - -
Acco06g1296 692 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Acco06g1296 692 MobiDBLite consensus disorder prediction 668 692 - -
Acco06g1296 692 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Acco06g1296 692 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Acco06g1296 692 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Acco06g1296 692 MobiDBLite consensus disorder prediction 122 140 - -
Acco06g1296 692 PANTHER ARFGAP/RECO-RELATED 1 692 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1296 Acco-ChrAcco06 8930989 8937087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1296 14 88 C2H2 Transcription Factor Family AT4G05330 35.443 1.07e-10 62.0