Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1287 ATGTACAAGAATTTACTCCAGGAAACTGCTCACAGAGCTGGATTGAATCTTCCTGTTTATACAACTTTCCTATCTGGACCAGGTTATGTTCCTATCTTCTCAAGGACAGTTGAGATTGCTGGAATGAATTTTTCTGGCGAGCCAGCTAGGACCAAGAAACAGGCTCAGAAGAATCCTGCAATGGTTGCTTGGACTTCATTGAGAAAATGTGAGTCTTTTGCTGCTTTTATTGCCTCTATCCTCCTTAGTGCCCAAGATGTTTATACATCTGCAATATGGAGTCTGCACTCGAACATTCTAGTAGCCAATGCGAAGCATGTACCCGTGCAATTCCAAAGTCGTGGCCTCTCCGGCGTTTCCCCTGTTGTGTCAATGAAACACATTTGGCAGCAAGAACAAATGATACATCAGCAAAATCACCTCTTGGCGCTAGCCATTCCATCCGCACCACAAACTTTCCCCTTTATGCAATCGGTTCTCCAGTCAAACTACTGTCTTTATATTCCAGCCAAGGGGACAATGTCAGATAAAAATATATGGGAGTCCCAATTAGGCGATTCCAAATCTCAAACCCTAGCCTCACTCACTATCCATCCAACAATGGGGAGGAAGCGAAAGCTCACGCCTAAACCCGCCGAATCCGTTGAACCCCCATTGAAGCAACAGCATCAACAGCAGCAGCAGCAGCAATATGTGCCAGAAGCGGACCAAACTGTTGAAGAACAAGATAATGGAGCCGATTACGAAGAAGTTGAAGTGGAAGAAGAGGAGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGCAGGAACAAGAACCCGGAGAAGGATCAGGACATGATAACGCTAATCCCGATCACGCCCAAAATGCGAATGATCAGCCATTTAAGGCCCAGTCGACATCGGCGGCTGCAACATCAGTAACCGCTCAGCATGGAAAGGAGGAGGAGGACGACGACGAGCCGATTCATATGCTTCTGGAACCGTTCAGCAAGGAACAAGTTTTAAATTTGCTGTGCGAAGCGGCGAATAAACATCGCGATGTAGCGGATCGGGTCCGAAAGGTGGCTGACGAGGACCCCGTTCATCGAAAAATCTTCGTACATGGCCTCGGATGGGACACAAACGCTGATACCCTCATCAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGCAAGGCGGTATGTGACAAGGTATCCGGTAAATCCAAGGGCTATGGCTTTATCCTCTTCAAATCGCGTCGTGGAGCTCGCAACGCGCTGAAGCAACCGCAGAAGAAGATCGGGAACCGAATGACGGCCTGCCAGCTGGCTTCGATTGGCCCAGTTCAACAGCCAGCCCCGGTGCAATCAACCCCAGTACAACCAGTATCAGAGTATACCCAAAGGAAGATCTATGTCAGCAACGTTGGCGCCGATTTGAATGCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAAGAAGGACCATTAGGGCTTGATAAGCTGACCGGGAAACCAAAAGGTTTCTGCTTGTTTGTGTACAAGAGCGTTGAGGGTGCTAGAAAGGCGCTGGAAGAGCCTCACAAGGAATTTGAGGGCCATATTTTGCATTGTCAGAAGGCAATAGATGGTCCAAAGCCAGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAACGAGACCCCTTCATATGTTGGTGGGGCTGCTACCGGACAAGGGCACCTCATGGCGCCAGCGGGACCTGGTATTGGATTTAACCAGCAGGCGGTGGCTGCACAGACAATAAACCCAGCTCTTGGGCAGGCACTGACAGCACTGCTTGCTACTCAAGGGGCTGGCTTGGGGCTGACTAATTTATTGGGAACCCTTGGATCAGGTGCTACAGTAAACCCGGCTGTTCCTTCTGTAGGCCATGGAATTCAGGGTGGTTACAGTAACCAACCAAATATAAGCTCGGGTGTCATTGGTGGATATGGAAATCAAAGTGGCTTACAGGGGACTTATCCAAGCCAGCAGGTGGGACAGAGTGGTTCTGGAAGAGGGCAGCATGGTGTTGGCCAGTATGGTGGTGCTGCCCCTTACATGGGGCACTAG 2112 0.4924 MYKNLLQETAHRAGLNLPVYTTFLSGPGYVPIFSRTVEIAGMNFSGEPARTKKQAQKNPAMVAWTSLRKCESFAAFIASILLSAQDVYTSAIWSLHSNILVANAKHVPVQFQSRGLSGVSPVVSMKHIWQQEQMIHQQNHLLALAIPSAPQTFPFMQSVLQSNYCLYIPAKGTMSDKNIWESQLGDSKSQTLASLTIHPTMGRKRKLTPKPAESVEPPLKQQHQQQQQQQYVPEADQTVEEQDNGADYEEVEVEEEEEVEEEEEEEEEEEQEQEPGEGSGHDNANPDHAQNANDQPFKAQSTSAAATSVTAQHGKEEEDDDEPIHMLLEPFSKEQVLNLLCEAANKHRDVADRVRKVADEDPVHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVQQPAPVQSTPVQPVSEYTQRKIYVSNVGADLNAQKLHVFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVEGARKALEEPHKEFEGHILHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNETPSYVGGAATGQGHLMAPAGPGIGFNQQAVAAQTINPALGQALTALLATQGAGLGLTNLLGTLGSGATVNPAVPSVGHGIQGGYSNQPNISSGVIGGYGNQSGLQGTYPSQQVGQSGSGRGQHGVGQYGGAAPYMGH 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1287 703 SMART rrm1_1 466 538 IPR000504 GO:0003723
Acco06g1287 703 SMART rrm1_1 366 438 IPR000504 GO:0003723
Acco06g1287 703 Coils Coil 245 274 - -
Acco06g1287 703 MobiDBLite consensus disorder prediction 240 275 - -
Acco06g1287 703 Pfam Double-stranded RNA binding motif 2 65 IPR014720 -
Acco06g1287 703 MobiDBLite consensus disorder prediction 549 564 - -
Acco06g1287 703 MobiDBLite consensus disorder prediction 284 310 - -
Acco06g1287 703 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 69 IPR014720 -
Acco06g1287 703 Gene3D - 447 579 IPR012677 -
Acco06g1287 703 CDD DSRM_AtDRB-like_rpt2 1 68 IPR044451 GO:0003725
Acco06g1287 703 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 243 542 - -
Acco06g1287 703 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 442 IPR000504 GO:0003723
Acco06g1287 703 FunFam UBP1-associated protein 2A 358 442 - -
Acco06g1287 703 MobiDBLite consensus disorder prediction 218 237 - -
Acco06g1287 703 Gene3D - 1 69 - -
Acco06g1287 703 MobiDBLite consensus disorder prediction 671 703 - -
Acco06g1287 703 MobiDBLite consensus disorder prediction 671 688 - -
Acco06g1287 703 MobiDBLite consensus disorder prediction 195 321 - -
Acco06g1287 703 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 433 IPR000504 GO:0003723
Acco06g1287 703 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 535 IPR000504 GO:0003723
Acco06g1287 703 SUPERFAMILY RNA-binding domain, RBD 446 563 IPR035979 GO:0003676
Acco06g1287 703 SUPERFAMILY dsRNA-binding domain-like 2 81 - -
Acco06g1287 703 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 541 IPR000504 GO:0003723
Acco06g1287 703 MobiDBLite consensus disorder prediction 541 564 - -
Acco06g1287 703 Gene3D - 356 443 IPR012677 -
Acco06g1287 703 SMART DRBM_3 2 68 IPR014720 -
Acco06g1287 703 SUPERFAMILY RNA-binding domain, RBD 357 450 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1287 Acco-ChrAcco06 8867633 8872700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1287 461 582 C2H2 Transcription Factor Family AT2G19380 32.800 8.99e-13 69.7