Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1245 ATGAAGTCTGGCTCACTAGAATACTGGAGGAATTACTTTCGAACTGCTAATTCTGATATATTCGATATAATTCACCACGCGATCATGGTGGCGGTTTCCGATTGTCCGAAGGAATTTAGAGTACGAAGAGACGGGATTGCGGAACGTTTGTATTCTAGTAGATGGGCTCGTTGTGTGGGGTGTGATCGATTAGAGTTGGCGGTTTCTGGTGATGATGAGGGAGATAGAGGTTGTAAGGGTGGTTTTGATCGAGAAGCTACTGACTTAGAAGCTGGAGCTAGTAAAGAGAGCAAGGTCAATAGTGGCAGAGACGATCATGAAGAGATGAACAGGAACCAAGTGAGTAATTTTAGTTTCGGAGAAGCAGAGGCATTGACTGATCAGATTGAAGAAGAGTGTCTGATGGCTGAGGAGGTTTTGAGGATCAAAGAGATTCTTCATAACAGCAAGGAAGAGCCCGATTCGGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGCTGGCACTGACCGTGGATCTTCTTAAGGGAACTGAGATTGGAAAGGCCGTCAATCCTCTCAGGAAGCATGGATCAAAGGAGATCCGTCAACTTGCACGAACTCTTATTGATGGTTGGAAAGCAATGGTAGATGAATGGGTCAATTCCACAGCAGCTGTAGCAACTTCAGCAGAAGGCACCCCAAATTCAGTTAATCCATCAGTTGTTGACGAAGAGGAAGGGCTTCCTTCACCTCCTCTTGATGAAATGGCTTTTCTTGCAGCTCCACCTGGTCCAATGGAATTCTCACAGTTCTTTGATGGGGTGGATGATGAAGGAAATTTTCAACAAAGTGGGGGATCCATCAAGACTCACACACACTTCAGAAAACCTACTATGGACAGTGAAAACGTAGCAAAGAGAAAACCACAGGCTTCCAGTGAGGCCAAGGAGAGTAAATTTCATCACACGGAGAAGGTTGAGGTTGCTATGAGACAGAGTAAACCGGTTTGCACTTATTCTGGCCCTGAGAGGCCACCAAAATCCAGGTTGCAGCAAAAACACAACACAGGACTAAAGATGCAGCAAAAACAAGAGACAAGTGCTATCCCAAAGAGGCCTCTTGTTGCTCAGCAAGATAAATTCAAGTGTTCAGATGATGTTTCAGTCCAAGCAAAACTAGAAGCCACTAAGAGGAAACTTCAGGAGTCTTATCAACAAGCAGAAAATGCCAAGAAGCAGCGAACAATACAGGTTATGGAGTTGCATGATCTTCCAAGGCAAGGTAATGGCCACCGAAATCCACCCTTCAAGCCTGGGAGGGCGCAGGGACGAAGATAG 1317 0.4556 MKSGSLEYWRNYFRTANSDIFDIIHHAIMVAVSDCPKEFRVRRDGIAERLYSSRWARCVGCDRLELAVSGDDEGDRGCKGGFDREATDLEAGASKESKVNSGRDDHEEMNRNQVSNFSFGEAEALTDQIEEECLMAEEVLRIKEILHNSKEEPDSVLFESLRRLQLLALTVDLLKGTEIGKAVNPLRKHGSKEIRQLARTLIDGWKAMVDEWVNSTAAVATSAEGTPNSVNPSVVDEEEGLPSPPLDEMAFLAAPPGPMEFSQFFDGVDDEGNFQQSGGSIKTHTHFRKPTMDSENVAKRKPQASSEAKESKFHHTEKVEVAMRQSKPVCTYSGPERPPKSRLQQKHNTGLKMQQKQETSAIPKRPLVAQQDKFKCSDDVSVQAKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPRQGNGHRNPPFKPGRAQGRR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1245 438 MobiDBLite consensus disorder prediction 344 361 - -
Acco06g1245 438 Pfam TFIIS helical bundle-like domain 161 209 IPR017923 -
Acco06g1245 438 ProSiteProfiles TFIIS N-terminal domain profile. 137 212 IPR017923 -
Acco06g1245 438 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 222 IPR035441 -
Acco06g1245 438 MobiDBLite consensus disorder prediction 286 322 - -
Acco06g1245 438 SMART TFS2_5 136 211 IPR003617 GO:0005634
Acco06g1245 438 MobiDBLite consensus disorder prediction 89 108 - -
Acco06g1245 438 MobiDBLite consensus disorder prediction 270 284 - -
Acco06g1245 438 MobiDBLite consensus disorder prediction 220 241 - -
Acco06g1245 438 CDD TFIIS_I 136 210 - -
Acco06g1245 438 Coils Coil 383 410 - -
Acco06g1245 438 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 219 IPR035441 -
Acco06g1245 438 MobiDBLite consensus disorder prediction 393 438 - -
Acco06g1245 438 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 430 IPR044805 -
Acco06g1245 438 MobiDBLite consensus disorder prediction 270 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1245 Acco-ChrAcco06 8576869 8579747 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Acco06g1245 Med26 2.3e-12 No_clan