Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1243 ATGGAAGATGATGAGTTCATCGACCCAAGCCAACCTTCTCAAGGTCTTTCGTCGGAAAGATACCTGCTCGGCTTCGTCTGCGCCAACATCGTTGGGATTAAACACTACTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACATCTCAACCCCTTCGATGAGAACGCCATTAAGGTCCTCAACACTCGAGCAAATCAGGTTGGGCATATTGAGCGCGGTGTCGCTGCCGTACTGTCTCCCTTGATAGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTTCTCGGGTAACAAGTTCAAGATTCCTTGTCAAATTCATATATTTGCGACGATCGAGAATTTTCCAACCGTGAAAGATGTAATATCAGCAAGTGGGTTAGCTTTAATTTTAGTATCTGATGCAGCGTCTACGTTGTCTGAGTCTATGGCTGTGAAAGATAAGAAGGCTAAGAATGAGTTTAAAACTTTAGATGAGATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAGGGGTGCTTTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTGATCTTTTCCTACATCAAAAGCAAGGCTTGGGGTGGTTAGTTCATAGAGAGAATTCTGATGAATTACCCCCATTTTGGGAAGAGACAGATGGAGCCTTTGTGAATGTCTTGACTAATTATCATACGGACACAAGGCCAGAGCCTTTGCGAGGTGGTATTCTAGCTGATGATATGGGATTAGGCAAGACCTTAACTTTACTTTCTTTGATTGCTCTTGATAAAGATTCTATTGCTCTAAATATGGAAGAAGGGAAGCATGATGACATGGGGGAGCGTGATGATTTCGCTATCTCGAGTGGTAAGAGGGGTAAAAGGAGAGGAGCAAATAAACAGCCCACTGGATCAGCAAAAAGACGCAAGACTGAGAGTACTTCTTCAAGGGTTCATGGGAATGAAAAATCTGTTGCTGTAGATTGCTCACCGTCAACTGGCATGGATATAAAGACTACATTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATAACACAGTTAGAGGAACATACTAAGCCTGGCACATTGAAGACGTACATGTATTATGGTGATAAAAGGACCGACAATGCTGAAGAACTTAAGATGTATGATTTAGTATTAACCACATACACCACTTTAGCTACTGAAGAATCTTCTCCAGACTCGCCCGTAAATAAAATACAGTGGTGGAGGGTCATTTTAGATGAAGCACATGTAATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATGATGAAAATAGTAGCTAAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATATGATTTATTTTCTCTCATGGCATTTTTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCAGAGCTTAGTGCAACGTCCTCTTGCTGAAAGAAACACAAACGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCGTTGCGAAGAACAAAAGATAAAACATTGGTAGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTGTATGATCAGATAGAATCAAGAGCGAAGGACATAGTGGCAGGTTATATAAATGATGGAAGCATAACGCGCAACTATTCAACCGTACTTGGTATAATTTTACGACTTCGCCAAATTTGTACTGATATGGCATTGTGCCCTTCAGATCTCAAATCGTTACTCCCTTCTAATAACATTGAAGATGTTTCCAACAGCCCGGAATTGCTGCAAAAGTTGGTGGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCACCAACTGACATTGTGATTACATGCTGTGCTCACATATACTGCCAAGCTTGTATTCTGAAAACCCTACAGCGGAGCAACGGTTGTTGTCCCCTTTGTCGTCACCCCCTTAAAGAATCTGATTTGTTCTCCGCCCCACCTCAATCTTCTGGTGCTGATGCTGATGAACTCTCCTCAGACAAAACCAGCTTATCCTCTAAGGTGTCTGCTCTGCTGAAACTCCTTGTTGCCTCAAGGGATCAACATCCAGCTACAAAATCAGTTGTGTTTTCTCAGTTTCGTAAGATGCTGATTTTACTGGAACAGCCTCTGAAAGCAGCTGGTTTCAAGACATTGCGCCTTGATGGGACAATGAATGCTAAACAAAGGGGCCGGGTTATGGAAGAATTTTCAGCTGGAGGAACAGAGGAACCCATGATTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCAATGGACCGTGTCCACCGCATCGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTAAAAATAGCATTGAAGAGAGGGTATTGGAGTTGCAAGAAAAGAAGAAGCAGCTTGCAAAGGAAGCTTTTGGAAAGAGGAGAGCAAAGGGTAACAGAGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA 2589 0.4291 MEDDEFIDPSQPSQGLSSERYLLGFVCANIVGIKHYSGTISGREMVGLVREHLNPFDENAIKVLNTRANQVGHIERGVAAVLSPLIDSELIIVEGIVPKTFSGNKFKIPCQIHIFATIENFPTVKDVISASGLALILVSDAASTLSESMAVKDKKAKNEFKTLDEIFKLVDENISKRGALEALEPPRSVIKSDLFLHQKQGLGWLVHRENSDELPPFWEETDGAFVNVLTNYHTDTRPEPLRGGILADDMGLGKTLTLLSLIALDKDSIALNMEEGKHDDMGERDDFAISSGKRGKRRGANKQPTGSAKRRKTESTSSRVHGNEKSVAVDCSPSTGMDIKTTLVVCPASVISTWITQLEEHTKPGTLKTYMYYGDKRTDNAEELKMYDLVLTTYTTLATEESSPDSPVNKIQWWRVILDEAHVIKNVNAKQSQAMMKIVAKRRWAVTGTPIQNGLYDLFSLMAFLRFQPFSTKSYWQSLVQRPLAERNTNGLLRLQVLMATISLRRTKDKTLVGLPPKTVETCFVELLEEERKLYDQIESRAKDIVAGYINDGSITRNYSTVLGIILRLRQICTDMALCPSDLKSLLPSNNIEDVSNSPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIYCQACILKTLQRSNGCCPLCRHPLKESDLFSAPPQSSGADADELSSDKTSLSSKVSALLKLLVASRDQHPATKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRGRVMEEFSAGGTEEPMILLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERVLELQEKKKQLAKEAFGKRRAKGNREVGGDDFRMLLSL 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1243 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 677 IPR013083 -
Acco06g1243 862 SMART helicmild6 720 805 IPR001650 -
Acco06g1243 862 SUPERFAMILY RING/U-box 602 662 - -
Acco06g1243 862 SMART ring_2 617 655 IPR001841 -
Acco06g1243 862 SMART ultradead3 190 480 IPR014001 -
Acco06g1243 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 849 IPR027417 -
Acco06g1243 862 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 852 IPR001650 -
Acco06g1243 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 498 IPR027417 -
Acco06g1243 862 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 152 858 - -
Acco06g1243 862 MobiDBLite consensus disorder prediction 275 293 - -
Acco06g1243 862 CDD SF2_C_SNF 686 816 - -
Acco06g1243 862 Gene3D - 16 135 - -
Acco06g1243 862 SMART HIRAN_2 23 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Acco06g1243 862 ProSitePatterns Zinc finger RING-type signature. 632 641 IPR017907 -
Acco06g1243 862 Gene3D - 516 861 IPR027417 -
Acco06g1243 862 Gene3D - 168 277 IPR038718 -
Acco06g1243 862 Gene3D - 323 507 IPR038718 -
Acco06g1243 862 Pfam Zinc finger, C3HC4 type (RING finger) 617 655 IPR018957 GO:0046872
Acco06g1243 862 CDD RING-HC_HLTF 612 664 - -
Acco06g1243 862 Pfam SNF2-related domain 197 576 IPR000330 GO:0005524|GO:0140658
Acco06g1243 862 MobiDBLite consensus disorder prediction 275 330 - -
Acco06g1243 862 ProSiteProfiles Zinc finger RING-type profile. 617 656 IPR001841 -
Acco06g1243 862 Coils Coil 818 838 - -
Acco06g1243 862 Pfam HIRAN domain 24 98 IPR014905 GO:0003676|GO:0008270|GO:0016818
Acco06g1243 862 Pfam Helicase conserved C-terminal domain 689 805 IPR001650 -
Acco06g1243 862 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 468 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1243 Acco-ChrAcco06 8558651 8561929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1243 3 862 RAD5 or RAD16-like Gene Family AT5G05130 62.529 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco06g1243 SNF2_N 1.5e-78 CL0023