Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1235 ATGGGACTGTGTCATGGAAAACCTAACGAAATATCGCAAACGCAAGGGGGAGAAAATCCAATATTCTGCAACGACAAAGAGGGACTTCCAAATTCTCAAGGAAGGAAATCCACAAACTTTCCCTTTTATAGTCCAAGTCCCTTACCGAGTCTCTTCAAGAACTCACCTGCAATCTCAATCTCAAGCGTGAGCTCAACTCCTTTACGCATCTTCAAGCGCCCGTTTCCTCCTCCTTCGCCGGCCAAGCACATTCGGTCGTTGCTTGCTCGAAGGCATGGTTCTGTGAAGCCAAACGAGGCCTCCATCTCCGAAGGAAGGGAGTGCCACGTCGGACTAGATAAGAGTTTCGGGTTTTCGAAGCAGTTCCTAGTTTATTACGAGCTTGGAGAAGAAATGGGACGTGGCCATTTTGGATATACTTGCTCCGCCAAGGGGAAAAAGGGAAGCTTGAAGGGGCAGGATGTGGCAGTCAAAGTCATCCCAAAATCCAAGGTTGCCATTCTCTTCAAAATTGTATATATGATGGTGGATTCTGAATCCATGATATATCAAAGGACTATGGGGCTCAAGTTCGAGTATCATGATGATTATGAATTTATGTTCTGTATGACAACAGCTATTGCTATTGAGGATGTAAGGAGAGAAGTGAAGATGTTGCGGGCTCTCACGGGACATAAGAACCTGGTGCAATTCTACGAGGCCTATGAAGATGATGACAATGCTTTTGTAGTTATGGAGTTATGCAAAGGAGGTGAACTCCTAGACAGAATACTTTCCAGGGGTGGAAAGTATTCAGAAGAGGACGCCAAGGTTGTTATGATTCAAATATTAAGCGTGGTGGCTTTCTGTCATCTTCAGGGTGTGGTTCATCGAGATCTCAAGCCAGAGAATTTTCTTTTTACATCTAAGGATGAAAACTCTACTCTAAAGGCTATTGATTTTGGTCTCTCTGACTATGTAAAGCCAGATGAAAGGTTGAACGATATTGTGGGGAGTGCATACTATGTGGCTCCTGAAGTTTTGCATAGATCTTATGGGACTGAAGCAGACATGTGGAGCATTGGTGTAATTGCTTACATTCTATTATGTGGAAGCCGTCCTTTCTGGGCCCGGACAGAATCTGGCATTTTTCGTACTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCAGTTGATGCAATAGATTTTGTAAAGAGACTGTTGAATAAGGATTATCGTAAGAGATTAACTGCAGCTCAGGCTCTTTGTCATCCATGGCTGGCAAATCATCATGATGATATGAAGATACCTCTGGATATGATAATCCCCAAGTTTGTTAAGGCTTACACATGCTCATCTTCTTTACGCAAATCAGCTCTAGGGGCTCTTGGCAAGACATTAACAGTTGCTCAGCTAGCTTATTTCAGAGAACAATTTACTCAGTTAGGGCCGAATAAAAATGGATTTATCTCATTGCAGAACTTTAAGAAGGCTTTTTTGGGGATCTCCACTGATGCCTCAAAGGATTCACGGGTTTTGGATTATGTGAACATGTTTAGTTCTATCCAATACAGGAAATTAGACTTCGAGGAATTCTGCGCTGCTGCTATAAGTGTGCACCAACTAAAGGCTATGGAGAACTGGGAGCAACATGCTAGGCGAGCCTATGAGCTATTTGAAAAGCGTGGAAATAGACCAATTATGATAGAAGAACTAGCCTCGGAGCTTGGGCTCAGCCCATCAGTGCCTGTTCATGTGGTTCTGCAAGATTGGATAAGACACGCAGATGGGAAACTCAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGCACATTTCAGAAGGCTTGA 1857 0.4373 MGLCHGKPNEISQTQGGENPIFCNDKEGLPNSQGRKSTNFPFYSPSPLPSLFKNSPAISISSVSSTPLRIFKRPFPPPSPAKHIRSLLARRHGSVKPNEASISEGRECHVGLDKSFGFSKQFLVYYELGEEMGRGHFGYTCSAKGKKGSLKGQDVAVKVIPKSKVAILFKIVYMMVDSESMIYQRTMGLKFEYHDDYEFMFCMTTAIAIEDVRREVKMLRALTGHKNLVQFYEAYEDDDNAFVVMELCKGGELLDRILSRGGKYSEEDAKVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRTVLKADPSFDEAPWPSLSVDAIDFVKRLLNKDYRKRLTAAQALCHPWLANHHDDMKIPLDMIIPKFVKAYTCSSSLRKSALGALGKTLTVAQLAYFREQFTQLGPNKNGFISLQNFKKAFLGISTDASKDSRVLDYVNMFSSIQYRKLDFEEFCAAAISVHQLKAMENWEQHARRAYELFEKRGNRPIMIEELASELGLSPSVPVHVVLQDWIRHADGKLSFLGFVRLLHGVSSRTFQKA 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1235 618 Coils Coil 616 618 - -
Acco06g1235 618 Gene3D Transferase(Phosphotransferase) domain 1 254 447 - -
Acco06g1235 618 ProSiteProfiles Protein kinase domain profile. 126 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1235 618 SMART serkin_6 126 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1235 618 FunFam CDPK-related kinase 1 464 536 - -
Acco06g1235 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Acco06g1235 618 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 594 - -
Acco06g1235 618 SUPERFAMILY Protein kinase-like (PK-like) 125 447 IPR011009 -
Acco06g1235 618 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Acco06g1235 618 Gene3D - 448 609 - -
Acco06g1235 618 Gene3D Phosphorylase Kinase; domain 1 128 253 - -
Acco06g1235 618 CDD STKc_CAMK 126 425 - -
Acco06g1235 618 Pfam Protein kinase domain 210 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco06g1235 618 FunFam Calcium-dependent protein kinase SK5 336 431 - -
Acco06g1235 618 SUPERFAMILY EF-hand 460 608 IPR011992 -
Acco06g1235 618 MobiDBLite consensus disorder prediction 1 37 - -
Acco06g1235 618 FunFam CDPK-related kinase 1 204 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1235 Acco-ChrAcco06 8513318 8517240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1235 1 616 EF-hand Containing Proteins AT3G50530 62.930 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Acco06g1235 Pkinase 3.1e-61 CL0016